Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023710.1 Length=50844 Score E Sequences producing significant alignments: (Bits) Value seq8 140 1e-28 seq18 129 2e-25 seq9 129 2e-25 >seq8 Length=24646021 Score = 140 bits (154), Expect = 1e-28 Identities = 253/363 (70%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 9885 TTCTACGACTCGCAGCG--GGCTCAGCACCACCCGGATCTCCCTCGCAACGATCGGCCCC 9942 ||||||||||| ||||| | ||| ||||||||||| || || |||||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 9943 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 10001 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 10002 CAGCAGGCGGACACCCGCGGGGACGCGCTGACGCACCTGACGCTC-CGAGCGGTGCGCGA 10060 |||||| ||| | | | ||| | || | ||||| | ||| | |||||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTGGCGA-CAGTGCGCGA 19508433 Query 10061 GGTGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTCGAGAACGACCCGGAACCCCG 10120 ||||||| ||||| || | ||||||||| ||| ||| |||||||||| | || | Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCA 19508373 Query 10121 CGTCCTGCGAGGCTGGGCTCGCGTCGCGACGGGCCGGGAGACCTGCGCCTGGTGCCTGAT 10180 || || |||||||| | ||||| || || || || || ||||||||||| ||||| Sbjct 19508372 GATCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGAT 19508313 Query 10181 GCTGATCAGCCGCGGACCTACGTACGTCCGGGCCGAGACCGCTGGTCTCGACCTTGACAC 10240 |||||| ||| || || |||| | ||| || | || ||||| |||| ||||| Sbjct 19508312 GCTGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACAC 19508253 Query 10241 GGA 10243 || Sbjct 19508252 CGA 19508250 >seq18 Length=36757632 Score = 129 bits (142), Expect = 2e-25 Identities = 390/600 (65%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 43180 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43230 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 43231 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43284 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 43285 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 43344 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 43345 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 43404 || | | ||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 43405 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 43464 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 43465 TCTAGGCTCTGGTGGTTGTCGATCCAGTCGATCACCTTATCGACCTGTTCTAGTCCGATG 43524 || ||| | || | | || ||| ||| | ||| |||||||| || || |||| | Sbjct 22718434 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 43525 TCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCAGCCG 43584 | || |||||||||||| |||||| |||| | || || |||||| || Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 43585 AGGTTAGGGGTCTCTTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 43640 | ||| |||||||| ||||| || || | ||| |||||| | ||| ||| Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 22718606 Query 43641 GATCTCATAGCACTCTTCGCGCGACAGCGGGGAGCCGGCGAGCTTCGAGAGCATGTATTT 43700 || || | | ||| || ||| |||||| |||| | || | | | | | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 22718666 Query 43701 CTCAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCACAC 43760 |||||| || ||||| | | | || |||||| |||||||||||||||| || | |||||| Sbjct 22718667 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 129 bits (142), Expect = 2e-25 Identities = 390/600 (65%), Gaps = 26/600 (4%) Strand=Plus/Minus Query 43180 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43230 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 43231 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43284 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 43285 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 43344 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 43345 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 43404 || | | ||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 43405 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 43464 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 43465 TCTAGGCTCTGGTGGTTGTCGATCCAGTCGATCACCTTATCGACCTGTTCTAGTCCGATG 43524 || ||| | || | | || ||| ||| | ||| |||||||| || || |||| | Sbjct 16531910 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 43525 TCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCAGCCG 43584 | || |||||||||||| |||||| |||| | || || |||||| || Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 43585 AGGTTAGGGGTCTCTTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 43640 | ||| |||||||| ||||| || || | ||| |||||| | ||| ||| Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 16531738 Query 43641 GATCTCATAGCACTCTTCGCGCGACAGCGGGGAGCCGGCGAGCTTCGAGAGCATGTATTT 43700 || || | | ||| || ||| |||||| |||| | || | | | | | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 16531678 Query 43701 CTCAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCACAC 43760 |||||| || ||||| | | | || |||||| |||||||||||||||| || | |||||| Sbjct 16531677 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162576543455872