Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023712.1 Length=71341 Score E Sequences producing significant alignments: (Bits) Value seq18 104 1e-17 seq9 104 1e-17 >seq18 Length=36757632 Score = 104 bits (114), Expect = 1e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 64776 CGCCAGTTGTCGCGCAGGCGCTGGCCGAACGGGTTGTAGCAGGCCCCGCACTTCGGGCAG 64835 |||| || |||||| || | ||||||| | |||||||||||| ||||| || | ||| Sbjct 22719566 CGCC-GTGGTCGCGAAGCCTCTGGCCGCTGGCGTTGTAGCAGGCACCGCAGTTGCGACAG 22719624 Query 64836 TCGATGTCGCCCTGCCAGCGGTAGCGGACGATTTCGGCGTCGCAGCGGGCGCAGTTCCAG 64895 || | ||||| ||| | ||||| | | || | |||| || | ||||| ||| Sbjct 22719625 TCCACGTCGCTCTGGCCTCGGTACCTCTGCACCTCATGGCCGCACCGTGAGCAGTCCCAC 22719684 Query 64896 GCGGCGTAGCCGCTTTCGACGATGAAGCCTCGGTCGTCGCGCACGTCGTCGACGTAGCGG 64955 |||||||| ||| |||| |||||| ||| | |||| ||||| | |||||||||||| Sbjct 22719685 GCGGCGTAATCGCCGTCGATGATGAACCCTTCGGCGTCACGCACAGCTTCGACGTAGCGG 22719744 Query 64956 AAGTTCTTTGCAGCCATGAT 64975 |||| || |||||||| Sbjct 22719745 TAGTTGTT---GGCCATGAT 22719761 >seq9 Length=46179939 Score = 104 bits (114), Expect = 1e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 64776 CGCCAGTTGTCGCGCAGGCGCTGGCCGAACGGGTTGTAGCAGGCCCCGCACTTCGGGCAG 64835 |||| || |||||| || | ||||||| | |||||||||||| ||||| || | ||| Sbjct 16530778 CGCC-GTGGTCGCGAAGCCTCTGGCCGCTGGCGTTGTAGCAGGCACCGCAGTTGCGACAG 16530720 Query 64836 TCGATGTCGCCCTGCCAGCGGTAGCGGACGATTTCGGCGTCGCAGCGGGCGCAGTTCCAG 64895 || | ||||| ||| | ||||| | | || | |||| || | ||||| ||| Sbjct 16530719 TCCACGTCGCTCTGGCCTCGGTACCTCTGCACCTCATGGCCGCACCGTGAGCAGTCCCAC 16530660 Query 64896 GCGGCGTAGCCGCTTTCGACGATGAAGCCTCGGTCGTCGCGCACGTCGTCGACGTAGCGG 64955 |||||||| ||| |||| |||||| ||| | |||| ||||| | |||||||||||| Sbjct 16530659 GCGGCGTAATCGCCGTCGATGATGAACCCTTCGGCGTCACGCACAGCTTCGACGTAGCGG 16530600 Query 64956 AAGTTCTTTGCAGCCATGAT 64975 |||| || |||||||| Sbjct 16530599 TAGTTGTT---GGCCATGAT 16530583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 228162573649472