Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq82 250 8e-61 >seq82 Length=657493 Score = 250 bits (276), Expect = 8e-61 Identities = 642/966 (66%), Gaps = 30/966 (3%) Strand=Plus/Plus Query 188635 GATAATCATATTATTGGACAAGA--AAAAGCAAAACGTCAATTAGCTGTATCAGTTTATA 188692 |||||| || | ||||||||||| | | | |||| || | || |||| | || |||| Sbjct 145436 GATAATTATGTAATTGGACAAGATCATACGAAAAAAGT--ACTATCTGTTGCGGTATATA 145493 Query 188693 ATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggagtaaaga 188752 ||||||| || || | | | | ||| | ||||| | || ||| | || | Sbjct 145494 ATCATTACAAACGTCTACGTAATTTGAATCAT---TCAAATAGTGTTGA---ATTA--GG 145545 Query 188753 tcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTC 188812 | ||| |||| || | ||| | || ||||||||| || ||||| ||||| ||| Sbjct 145546 TAAAAG----TAATATTTTATTAATAGGACCTACTGGTAGTGGAAAAACCTTATTAGCTG 145601 Query 188813 AAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAG 188872 |||| | ||| | | ||| ||||||| | | || | ||||| ||| || | || | Sbjct 145602 AAACTCTCGCTAAATTATTAGATGTACCATTTACCATTGCAGATGCTACTACTCTGACTG 145661 Query 188873 AAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTG 188932 |||| || || ||||| |||||||| ||||| || | | ||| | ||| | | Sbjct 145662 AAGCAGGATACGTAGGAGAAGATGTTGAAAATGTCATACAAAAATTATTACAAAAATGTA 145721 Query 188933 ATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTG 188992 | ||| || | || ||| ||| || ||||||||||| || ||| |||||||||| | Sbjct 145722 AATACAATGTAAAAAAAGCAGAATTAGGTATTGTATATATAGACGAAATAGATAAAATAG 145781 Query 188993 CTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAG 189052 | | ||||| || | |||| ||||| ||||||| ||||| ||||||||||| |||| Sbjct 145782 CACGCAAATCTGATAATCCATCTATTACTAGAGATGTTTCTGGAGAAGGAGTACAACAAG 145841 Query 189053 CTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAAC 189112 |||||||||| | |||||||| || | || |||||||||||||| |||||||||| Sbjct 145842 CTTTATTAAAGTTGATTGAAGGAACGTTGGCATCTGTTCCTCCTCAAGGAGGTCGTAAAC 145901 Query 189113 ACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAG 189172 | || || |||||| | | || | |||| | ||||| || ||||| || || | Sbjct 145902 ATCCACAGCAAGAATTTTTACAAGTCAATACTGCAAATATTTTATTTATCTGTGCCGGTG 145961 Query 189173 CGTTT---GA-TGGTCTTGAAAACATTATCAAGAGACGCGCTACAAAATCAACTTTAGGT 189228 | ||| || | || | || ||| || |||| | | | | || | | ||| Sbjct 145962 CTTTTTCAGAGTTATCCAG-AATTATTTCTAAAAGACTTGAAAAAGGAACAGTTATTGGT 146020 Query 189229 TTTGATGATAGTGTAGATAAAGTACAAGAAGAAATCAAGGATGACAATA--AAGTATTCC 189286 ||| ||| | |||| | | ||| ||||||| || | || | | |||| Sbjct 146021 TTTAATGCAATGATAGACAGAAAACAGAAAGAAAT-----ATCAGAAGAGGCATTATTAA 146075 Query 189287 AACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTG 189346 ||| | |||| ||||| | | || | |||| | ||||||||||||||||| || Sbjct 146076 AACTAGTAGAACCTAAAGATCTCATAAAATTTGGTCTTATTCCAGAATTTATTGGTCGGT 146135 Query 189347 TACCAGTAATCGCAACTCTTAACAAACTTGATCG-AGATGCATTGATTAACATTTTAACT 189405 | || |||| | | | |||| | |||| || ||||||||| |||| || | | Sbjct 146136 TGCCTATAATTACTA-TATTAAATGAATTGAACGAAGATGCATTAGTTAAGATACTTTGT 146194 Query 189406 GAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGTGGAA 189465 || || |||| ||| | |||||||| ||||| | ||| || | | || || | Sbjct 146195 GAACCCAAAAATGCTTTAATTAAACAGTATCAAACATTATTTCAATTAGAAAAAGTACAT 146254 Query 189466 TTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTAATACT 189525 | ||||| | ||| || | | ||| |||||| | |||| || | || || Sbjct 146255 CTTGAATTTAATAAAAAATCTATCTTATCTATTGCAAAAAAAGCAATGCATAAAAAAACA 146314 Query 189526 GGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTATGAAGTT 189585 ||||| | |||||| ||| ||| | ||||| ||| || ||||||||||||| ||| | Sbjct 146315 GGTGCAAGAGGATTAAGATCTATTGTGGAAAACATTTTGCTAGATGTAATGTACGAATTA 146374 Query 189586 CCAGCT 189591 ||| || Sbjct 146375 CCATCT 146380 Score = 141 bits (156), Expect = 3e-28 Identities = 400/604 (66%), Gaps = 23/604 (4%) Strand=Plus/Minus Query 206686 GGTATTAGTGGCGGGCAAGATTCTACTTTGGCTGGTAAACTAGCTCAAATGGCAGTTGAT 206745 ||||||||||| || ||||| ||||| || |||||||| || |||||| || ||||| Sbjct 454482 GGTATTAGTGGAGGACAAGACTCTACATTAACTGGTAAATTATGTCAAATAGCTATTGAT 454423 Query 206746 GAATTACAAGATGAAGGTGTAGTTGCAAC------ATTTGTAGCTGTAAGATTACCTTAC 206799 |||||| | ||| || | || |||| | || | | |||||||| Sbjct 454422 GAATTAAGAACAGAAACACAAGATATGACTTATCAATTTATTGCATTGCGCCTACCTTAC 454363 Query 206800 GGAACACAAAAGGATGAAGACGAT-GCACAGTTAGCTTTACAATTTATCCAACCTACTGA 206858 |||| ||| | |||||| | ||| | | || | ||| ||||||| | || | | Sbjct 454362 GGAATTCAACATGATGAAAAAGATTGTAAAGATGTTATTA-AATTTATAAATCCAAATCT 454304 Query 206859 AGTTGTAGATTTTAATATTCAAAATGCAACTGATAGTT-TCACGGAAACCTTT-AAAGAA 206916 || | || | ||||| |||| ||| | ||| | | ||| |||| ||| || Sbjct 454303 TGTACTCAATATAAATATAAAAAAAGCAGTTTTAAGTAGTGAA--AAATCTTTGAAAAAA 454246 Query 206917 TCTACGGATAGTATATTGTCTGATTACAATAAAGGTAATGTGAAAGCTCGTATGAGAATG 206976 || | || ||| | || ||||| | ||||| || | |||||| | ||||||| Sbjct 454245 TCA---GGTATTATTATTTCAGATTATATAAAAGGAAACGAAAAAGCTAGAGAGAGAATG 454189 Query 206977 ATAGCTCAATATGCTATTGGCGGAGCGAAAAA---TCTATTAGTAATTGGAACAGATCAT 207033 | || || ||| ||||| | || ||||| ||| ||||| ||||||| ||| Sbjct 454188 AAAGTACAGTATAGTATTGCTGCAGTAAAAAAGGGTCTTGTAGTA---GGAACAGGACAT 454132 Query 207034 GCTGCAGAAGCTATAACTGGTTTCTATACAAAATTTGGAGACAATGGAGTAGATATTTTA 207093 || ||||| |||| ||||| || | ||||||| |||||| |||||| |||||| Sbjct 454131 GCATCAGAAACTATTACTGGATTTTTCACAAAATATGGAGATAATGGAACAGATATCAAT 454072 Query 207094 CCTATAAGCGGTCTTACGAAAA-GACAAGGTAAAATGTTATTGGAAGAATTAAATGCTCC 207152 ||||| || ||| || ||||||| ||||||||||| || | |||||| ||| Sbjct 454071 CCTATT-GCAAAATTAAATAAGCGACAAGGCAAAATGTTATTAAAAAAGTTAAATTGTCC 454013 Query 207153 AGAGAGATTATATTTAAAAGTACCAACAGCAGATCTTTTAGATGATAAACCATTACAAAC 207212 | |||||| | ||| ||| || ||||||||| ||| | | ||| |||| Sbjct 454012 TGCACATTTATATCTTAAAAAACCTACTGCAGATCTTGAAGAAAAATATCCACAACAAGA 453953 Query 207213 AGATGAAGATGAGTTGGGTATGACTTACGATGAAATAGATAGTTACTTAGAAGGATTAGA 207272 ||| ||| | || ||| |||| || ||| ||| ||| ||| ||||||||| | | Sbjct 453952 AGACGAATCTATTTTAGGTGTGACATATGATACAATTGATTCTTATTTAGAAGGAAAAAA 453893 Query 207273 AATA 207276 |||| Sbjct 453892 AATA 453889 Score = 122 bits (134), Expect = 3e-22 Identities = 314/471 (67%), Gaps = 42/471 (9%) Strand=Plus/Minus Query 180779 AGCTTTACCAGGGAAATTAGCTGATTGT------ACT--TCTAAAACTTATTCTGAACTA 180830 ||||||||| || |||||| |||||||| | | || |||||| || ||| | Sbjct 275480 AGCTTTACCTGGAAAATTATCTGATTGTCAAGAAAATGATCCTAAACTT--TCAGAAATT 275423 Query 180831 TATATTGTAGAAGGTGATTCTGCTGGTGGTTCTGCTAAGTCCGGAAGAAATCGTTACTAC 180890 ||| | || ||||||||||| |||||||| || || || ||||||||||| | | Sbjct 275422 TATTTAGTTGAAGGTGATTCAGCTGGTGGATCCGCAAAACAAGGAAGAAATCGAAAAAAT 275363 Query 180891 CAAGCAATATTATCATTACGTGGCAAAATCTTAAACGTGGAGAAAAGTAGTTTAGAAAGA 180950 ||||| ||| | | ||| || ||||| ||||| || || ||| | || |||| | Sbjct 275362 CAAGCTATACTTCCTTTAAAAGGAAAAATATTAAATGTCGAAAAATCAAAATTTGAAAAA 275303 Query 180951 ATGCTTAACTCTGAAATGATTAAGAATATC--ATAGGTGCAGTTGGTACTGGCATTGATT 181008 |||||| ||| || || | | | || ||| |||| | || ||| |||| | Sbjct 275302 ATGCTTTTATCTCAA--GAATTATCTTCTCTAATAACTGCATTAGGCTGTGGAATTGGT- 275246 Query 181009 CGCCAGGACAAAAGTTCGAATAT------GAAAAATTGCGATATGATAAAATTATTTTCA 181062 |||| ||||||| || ||||| ||||| | | |||||| ||| Sbjct 275245 ---------AAAA--ACGAATATAACATAGATAAATTAAGATATAACTATATTATTATCA 275197 Query 181063 TGTGTGATGCTGATGTCGATGGTTCTCATATTGAAGCACTACTACTAACGTTATTCTATA 181122 || |||||| ||||| || ||| | |||||| | || |||| |||| || || ||| Sbjct 275196 TGACTGATGCGGATGTAGACGGTGCACATATTCGAACATTACTTTTAACTTTTTTTTATC 275137 Query 181123 ATTA--TATGAGACCATTAATTGAAAAAGGGCATGTATATGCGGCTCAGCCACCATTATA 181180 | | || ||| ||||||||||||||| ||| | ||| || || || |||||||| Sbjct 275136 GTCAATTACCAGA--ATTAATTGAAAAAGGACATATTTATATTGCACAACCTCCATTATA 275079 Query 181181 TCGAGTAGTTAA---AAAGAACGAATCAATTTACCTTAAAGATGATCATGA 181228 |||| || ||| || ||| ||| || ||||| ||||||| || Sbjct 275078 CAAAGTAAAAAAAGGAAAAAAAGAA-GAATATA--TTAAAAATGATCAAGA 275031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591882334619648