Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023720.1 Length=53142 Score E Sequences producing significant alignments: (Bits) Value seq18 125 2e-24 seq9 125 2e-24 seq8 87.8 6e-13 >seq18 Length=36757632 Score = 125 bits (138), Expect = 2e-24 Identities = 386/598 (65%), Gaps = 22/598 (4%) Strand=Plus/Plus Query 44441 TCCCGCGTCCAGTCCGTCAGGTCGTACGGGTACGTCGGCTTA---------CCGGTCTTC 44491 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44492 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44545 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 44546 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 44605 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 44606 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 44665 || | | ||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 44666 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 44725 |||||||||| ||||| ||||| ||| | || || |||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 44726 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 44785 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718434 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 44786 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCCG 44845 | || ||||||||||| | ||| |||||| || || |||||| || Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 44846 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGTCCTTGAAGA 44903 | |||||||||||||||||| || || | ||| |||||| | ||| | Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 22718608 Query 44904 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCAAGTATTTCT 44963 | || | | ||| || |||||||||| |||| | || | | | | | || Sbjct 22718609 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 22718668 Query 44964 CAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45021 |||| || ||||||| | |||| |||||| |||||||||||||||| || |||||| Sbjct 22718669 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 125 bits (138), Expect = 2e-24 Identities = 386/598 (65%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 44441 TCCCGCGTCCAGTCCGTCAGGTCGTACGGGTACGTCGGCTTA---------CCGGTCTTC 44491 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44492 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44545 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 44546 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 44605 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 44606 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 44665 || | | ||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 44666 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 44725 |||||||||| ||||| ||||| ||| | || || |||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 44726 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 44785 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531910 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 44786 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCCG 44845 | || ||||||||||| | ||| |||||| || || |||||| || Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 44846 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGTCCTTGAAGA 44903 | |||||||||||||||||| || || | ||| |||||| | ||| | Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 16531736 Query 44904 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCAAGTATTTCT 44963 | || | | ||| || |||||||||| |||| | || | | | | | || Sbjct 16531735 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 16531676 Query 44964 CAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45021 |||| || ||||||| | |||| |||||| |||||||||||||||| || |||||| Sbjct 16531675 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 >seq8 Length=24646021 Score = 87.8 bits (96), Expect = 6e-13 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 10441 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCCTG 10500 ||||||||||| ||||| | ||||||||||| || || || ||||| || | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 10501 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATGCA 10559 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 10560 GCAGGCGGACACCCGCGGGGACGCGCTGACGCACCTGACGCTGCGCG-CCGTCCGCGAGG 10618 |||||| ||| | | | ||| | || | ||||| || ||| | || ||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGAAG 19508431 Query 10619 TGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTCGAGAACGACCC 10667 |||||| ||||| |||| ||||||||| ||| ||| |||||||||| Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169930023298048