Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023723.1 Length=53684 Score E Sequences producing significant alignments: (Bits) Value seq18 125 2e-24 seq9 125 2e-24 >seq18 Length=36757632 Score = 125 bits (138), Expect = 2e-24 Identities = 386/598 (65%), Gaps = 22/598 (4%) Strand=Plus/Plus Query 44908 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44958 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44959 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 45012 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 45013 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 45072 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 45073 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 45132 || | | ||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 45133 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 45192 |||||||||| ||||| ||||| ||| | || || |||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 45193 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 45252 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718434 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 45253 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCCG 45312 | || ||||||||||| | ||| |||||| || || |||||| || Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 45313 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGTCCTTGAAGA 45370 | |||||||||||||||||| || || | ||| |||||| | ||| | Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 22718608 Query 45371 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCAAGTATTTCT 45430 | || | | ||| || |||||||||| |||| | || | | | | | || Sbjct 22718609 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 22718668 Query 45431 CAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45488 |||| || ||||||| | |||| |||||| |||||||||||||||| || |||||| Sbjct 22718669 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 125 bits (138), Expect = 2e-24 Identities = 386/598 (65%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 44908 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44958 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44959 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 45012 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 45013 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 45072 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 45073 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 45132 || | | ||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 45133 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 45192 |||||||||| ||||| ||||| ||| | || || |||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 45193 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 45252 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531910 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 45253 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCCG 45312 | || ||||||||||| | ||| |||||| || || |||||| || Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 45313 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGTCCTTGAAGA 45370 | |||||||||||||||||| || || | ||| |||||| | ||| | Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 16531736 Query 45371 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCAAGTATTTCT 45430 | || | | ||| || |||||||||| |||| | || | | | | | || Sbjct 16531735 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 16531676 Query 45431 CAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45488 |||| || ||||||| | |||| |||||| |||||||||||||||| || |||||| Sbjct 16531675 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171664394957952