Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023726.1 Length=53597 Score E Sequences producing significant alignments: (Bits) Value seq18 178 4e-40 seq9 178 4e-40 seq8 84.2 7e-12 >seq18 Length=36757632 Score = 178 bits (196), Expect = 4e-40 Identities = 403/600 (67%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 43013 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43063 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 43064 GCCA---TGAAGTACACACCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43117 ||| ||||||| | ||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 43118 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGTCTTCCAGTCAACC 43177 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 43178 ACCAGCACCTCGCCGTCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 43237 || | | ||| ||||||| ||||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 43238 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGCGCCACACC 43297 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 43298 TCTAGGCTCGGGTGGTTGTCGATCCAGTCGATCACCTTATCGACCTGTTCTAGTCCGATG 43357 || ||| || | | || ||| ||| | ||| |||||||| || || |||| | Sbjct 22718434 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 43358 TCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCACCCC 43417 | || |||||||||||| |||||| |||| | || || ||||||| | Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 43418 AGGTTCGGGGTCTCTTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 43473 | |||||||||||| ||||| || || | ||| |||||| | ||| ||| Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 22718606 Query 43474 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 43533 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 22718666 Query 43534 CTCAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 43593 |||||| || ||||||| | |||| |||||| |||||||||||||||| || |||||| Sbjct 22718667 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 178 bits (196), Expect = 4e-40 Identities = 403/600 (67%), Gaps = 26/600 (4%) Strand=Plus/Minus Query 43013 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43063 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 43064 GCCA---TGAAGTACACACCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43117 ||| ||||||| | ||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 43118 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGTCTTCCAGTCAACC 43177 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 43178 ACCAGCACCTCGCCGTCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 43237 || | | ||| ||||||| ||||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 43238 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGCGCCACACC 43297 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 43298 TCTAGGCTCGGGTGGTTGTCGATCCAGTCGATCACCTTATCGACCTGTTCTAGTCCGATG 43357 || ||| || | | || ||| ||| | ||| |||||||| || || |||| | Sbjct 16531910 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 43358 TCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCACCCC 43417 | || |||||||||||| |||||| |||| | || || ||||||| | Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 43418 AGGTTCGGGGTCTCTTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 43473 | |||||||||||| ||||| || || | ||| |||||| | ||| ||| Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 16531738 Query 43474 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 43533 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 16531678 Query 43534 CTCAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 43593 |||||| || ||||||| | |||| |||||| |||||||||||||||| || |||||| Sbjct 16531677 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 >seq8 Length=24646021 Score = 84.2 bits (92), Expect = 7e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 10306 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGATCTACCTCGCAACGACCGACCCCTG 10365 ||||||||||| ||||| | ||||||||||| || || |||||||| | | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 10366 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCGCGTGAGCGGATGCA 10424 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 10425 GCAGTCGGAGACGCGCGGCGACGCGCTGACCCACCTGACGCTACGCG-CGGTGCGCGAGG 10483 |||| | || | | | ||| | ||| | ||||| || ||| | |||||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGAAG 19508431 Query 10484 TGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTTGAGAACGACCC 10532 |||||| ||||| |||| ||||||||| ||| || |||||||||| Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171385999507008