Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023739.1 Length=51821 Score E Sequences producing significant alignments: (Bits) Value seq8 700 0.0 seq18 129 2e-25 seq9 129 2e-25 >seq8 Length=24646021 Score = 700 bits (776), Expect = 0.0 Identities = 695/893 (78%), Gaps = 35/893 (4%) Strand=Plus/Minus Query 12313 AGATCGCACAGACCAAAGACACGATGTTCACCGGGTACCTCGACCCCGTGCAGGCGAAGG 12372 ||||||| |||||| || || ||||||| || ||||| || |||| ||||||||||| Sbjct 19507283 AGATCGCCCAGACCGGCGATACCATGTTCAAGGGCTACCTGGAGCCCGAGCAGGCGAAGG 19507224 Query 12373 ACTACTTCGCCGAGGCCGAGAAGACCTCGATCGTTCAGCGCGTCGCCCAGAAGATCCCGA 12432 | |||||||||||||||||||||||||||||||| |||| ||||||||||| | |||| Sbjct 19507223 ATTACTTCGCCGAGGCCGAGAAGACCTCGATCGTCCAGCAGTTCGCCCAGAAGGTGCCGA 19507164 Query 12433 TGGGTGCCACCGGCATCGTCATCCCCCACTGGACCGGAGACGTCTCCGCTCAGTGGATCG 12492 ||||| |||| ||| ||||| |||||| ||| ||||| || |||||||||| Sbjct 19507163 TGGGTACCACGGGCCAGAAGATCCCGCACTGGGTCGGCGACGTGAGTGCCCAGTGGATCG 19507104 Query 12493 GTGAAGGCGACATGAAGCCCATCACCAAGGGCAACATGACCAAGCGCGACGT-GCACCCC 12551 |||| || |||||||||||||||||||||||||||||||| || | | || |||| Sbjct 19507103 GTGAGGGTGACATGAAGCCCATCACCAAGGGCAACATGACTTCGCAGACCATCGCGCCCC 19507044 Query 12552 GCCAAGATCGCGACGATCTTCGTCGCCTCCGCGGAAACCGTCCGTGCGAACCCGGCCAAC 12611 | |||||||||||||||||||| || || ||||| ||||||||||| ||||| |||||| Sbjct 19507043 AC-AAGATCGCGACGATCTTCGTGGCGTCTGCGGAGACCGTCCGTGCCAACCCCGCCAAC 19506985 Query 12612 TACCTGGGCACCATGCGGACCAAGGTCGCTACCGCGATCGCTATGGCGTTCGACAACGCC 12671 |||||||| |||||||| |||||||| || ||||| |||| |||||||||||| ||| Sbjct 19506984 TACCTGGGAACCATGCGTACCAAGGTGGCGACCGCCTTCGCGATGGCGTTCGACGGCGCG 19506925 Query 12672 GCGCTGCACGGCACCAACGCCCCGTCCGCCTTCCAGGGTTACCTCGACCAGTCGAACAAG 12731 ||| ||||||||||| || ||||| | || || ||| ||| ||| | | |||| Sbjct 19506924 GCGATGCACGGCACCGACAGCCCGTTC-CCGACC-----TACATCGGTCAGACCACCAAG 19506871 Query 12732 ACGCAGTCGAT---------CA-----GCC-CGAACGCCTAC---CAGGGCCTCGGCGTC 12773 | ||||| || ||| ||| || ||| |||| | | ||| Sbjct 19506870 GCCATCTCGATTGCTGACACCACCGGTGCCACGACCGTGTACGACCAGG---TGGCCGTG 19506814 Query 12774 AGCGGCTTGACCAAGCTGGTCACCGACGGCAAGAAGTGGACCCACACCCTGCTCGACGAC 12833 | |||| ||| | |||||| | ||||||||||||||||||||||||||| || |||||| Sbjct 19506813 AACGGCCTGAGCCTGCTGGTGAACGACGGCAAGAAGTGGACCCACACCCTTCTGGACGAC 19506754 Query 12834 ACCGTTGAGCCGGTTCTGAACGGATCGGTGGACGCCAACGGTCGCCCGCTGTTCGTGGAG 12893 | | |||||| | |||||||| || |||| |||||||||||||||||| | ||| Sbjct 19506753 ATCACCGAGCCGATCCTGAACGGCGCGAAGGACCAGAACGGTCGCCCGCTGTTCATCGAG 19506694 Query 12894 TCGACCTACG---AGTCCCTCACCACCCCGTTCCGCGAGGGCCGTATCCTCGGCCGCCCG 12950 |||||||||| || || | | ||||||||| |||||| ||| ||| ||| ||| Sbjct 19506693 TCGACCTACGGTGAGGCCG---CGAGCCCGTTCCGTTCGGGCCGGATCGTCGCCCGTCCG 19506637 Query 12951 ACCATCCTCAGCGATCACGTCGCCGAGGGCGATGTCGTGGGCTACGCCGGTGACTTCTCC 13010 |||||||||||||| ||||||| |||||| || |||| | |||||||||||| Sbjct 19506636 ACCATCCTCAGCGACCACGTCGTGGAGGGCACCACGGTCGGCTTCATGGGTGACTTCTCC 19506577 Query 13011 CAGATCATCTGGGGCCAGGTCGGCGGCCTGTCCTTCGACGTCACCGACCAGGCGACGCTG 13070 ||| |||||||||||||| ||||||| |||||||||||||| || || |||||||| ||| Sbjct 19506576 CAGCTCATCTGGGGCCAGATCGGCGGTCTGTCCTTCGACGTGACGGATCAGGCGACCCTG 19506517 Query 13071 AACCTGGGCACGCAAGAGTCCCCGAACTTCGTCTCGCTGTGGCAGCACAACCTCGTCGCC 13130 ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 19506516 AACCTGGGCACCGTCGAGAGCCCGAACTTCGTCTCGCTGTGGCAGCACAACCTCGTCGCA 19506457 Query 13131 GTCCGTGTCGAGGCCGAGTACGGCCTGCTCATCAACGACGTGAACGCGTTCGT 13183 |||||||||||||| ||||||| | | | |||||||| | |||||||| Sbjct 19506456 GTCCGTGTCGAGGCTGAGTACGCGTTCCACTGCAACGACGCCGAGGCGTTCGT 19506404 Score = 113 bits (124), Expect = 1e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 13706 TTTCGGGCCGAGGTGATCGACATCGAGGCCGAGGCCGTGCTTCGGCTGGTCCGGAATCAC 13765 || |||||||| ||||||||||||||||||| || ||||| || ||||| || || | Sbjct 19505985 TTCCGGGCCGATCTGATCGACATCGAGGCCGACGCGGTGCTGCGTCTGGTGCGTAACCCG 19505926 Query 13766 GAGGGCTACCTCTCGGAGACCGACGGCAACTACACGTACATGCTCCAGGC 13815 |||||||||||||||||||||||||| ||||| ||| ||||||||| Sbjct 19505925 GAGGGCTACCTCTCGGAGACCGACGGGGCGTACACCTACCAGCTCCAGGC 19505876 >seq18 Length=36757632 Score = 129 bits (142), Expect = 2e-25 Identities = 389/600 (65%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 44172 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44222 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44223 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44276 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 44277 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 44336 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 44337 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCGCGGATCTCTATCCCA 44396 || | | ||| || ||||||||||| ||||| | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 44397 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 44456 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 44457 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 44516 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718434 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 44517 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGAGAACCACCAGCCG 44576 | || || |||||||| | ||| |||||| || || | |||||| || Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 44577 AGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 44632 | ||| |||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 22718606 Query 44633 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 44692 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 22718666 Query 44693 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 44752 |||||| || ||||||| | | || |||||| |||||||||||||||| || |||||| Sbjct 22718667 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 129 bits (142), Expect = 2e-25 Identities = 389/600 (65%), Gaps = 26/600 (4%) Strand=Plus/Minus Query 44172 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44222 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44223 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44276 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 44277 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 44336 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 44337 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCGCGGATCTCTATCCCA 44396 || | | ||| || ||||||||||| ||||| | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 44397 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 44456 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 44457 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 44516 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531910 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 44517 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGAGAACCACCAGCCG 44576 | || || |||||||| | ||| |||||| || || | |||||| || Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 44577 AGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 44632 | ||| |||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 16531738 Query 44633 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 44692 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 16531678 Query 44693 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 44752 |||||| || ||||||| | | || |||||| |||||||||||||||| || |||||| Sbjct 16531677 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165702892370496