Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023748.1 Length=53137 Score E Sequences producing significant alignments: (Bits) Value seq18 143 9e-30 seq9 143 9e-30 seq8 123 8e-24 >seq18 Length=36757632 Score = 143 bits (158), Expect = 9e-30 Identities = 394/598 (66%), Gaps = 22/598 (4%) Strand=Plus/Plus Query 44457 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44507 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44508 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44561 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 44562 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 44621 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 44622 ACCAGCACCTCACCATCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 44681 || | | ||| || |||| ||||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 44682 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 44741 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 44742 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGATA 44801 || ||| | || | | || ||| | | | ||| || ||||||| || |||| Sbjct 22718434 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 44802 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCACCCC 44861 | || ||||||||||| | ||| |||||| || || ||||||| | Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 44862 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCTTTGAAGA 44919 | |||||||||||||||||| || || | ||| |||||| | ||| | Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 22718608 Query 44920 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATTTCT 44979 | || | | ||| || |||||||||| |||| | | | | | | | || Sbjct 22718609 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 22718668 Query 44980 CAGCCACCGCGTGGACCGCTGAGCCCTGCTGAAGCCAGGCCGCTGGTCTACGCCACAC 45037 |||| || ||||||| ||| | |||||| | |||||||||||||| | ||||||| Sbjct 22718669 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 143 bits (158), Expect = 9e-30 Identities = 394/598 (66%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 44457 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44507 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44508 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44561 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 44562 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 44621 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 44622 ACCAGCACCTCACCATCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 44681 || | | ||| || |||| ||||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 44682 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 44741 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 44742 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGATA 44801 || ||| | || | | || ||| | | | ||| || ||||||| || |||| Sbjct 16531910 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 44802 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCACCCC 44861 | || ||||||||||| | ||| |||||| || || ||||||| | Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 44862 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCTTTGAAGA 44919 | |||||||||||||||||| || || | ||| |||||| | ||| | Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 16531736 Query 44920 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATTTCT 44979 | || | | ||| || |||||||||| |||| | | | | | | | || Sbjct 16531735 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 16531676 Query 44980 CAGCCACCGCGTGGACCGCTGAGCCCTGCTGAAGCCAGGCCGCTGGTCTACGCCACAC 45037 |||| || ||||||| ||| | |||||| | |||||||||||||| | ||||||| Sbjct 16531675 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 >seq8 Length=24646021 Score = 123 bits (136), Expect = 8e-24 Identities = 247/361 (68%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 10457 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGATCTACCTCGCAACGACCGACCCCTG 10516 ||||||||||| ||||| | ||||||||||| || || |||||||| | | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 10517 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATGCA 10575 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 10576 GCAGGCGGAGACCCGCGGGGACGCGCTGACGCACCTGACGCTGCGCGCC-GTCCGCGAGG 10634 |||||| || | | | ||| | || | ||||| || ||| | || ||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTG-GCGACAGTGCGCGAAG 19508431 Query 10635 TGGAGAACGCCGGTCGTCAGCAGATCATCCACGCCGTTGAGAACGACCCGGAACCCCGCG 10694 |||||| || ||||| | ||||||||| ||| || |||||||||| | || | Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCAGA 19508371 Query 10695 TCTTGCGGGGCTGGGCTCGCGTCGCGACCGGCAGGGAGACCTGCGCGTGGTGCCTGATGC 10754 || || ||||||||| | ||||| ||||| | || || ||||| ||||| ||||||| Sbjct 19508370 TCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGATGC 19508311 Query 10755 TGATCAGCCGCGGACCTACGTACGTCCGGGCCGAGACCGCTGGTCTCGACCTTGACACGG 10814 |||| ||| || || |||| | ||| || | || ||||| |||| ||||| | Sbjct 19508310 TGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACACCG 19508251 Query 10815 A 10815 | Sbjct 19508250 A 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169914023559488