Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023862.1 Length=52136 Score E Sequences producing significant alignments: (Bits) Value seq18 154 5e-33 seq9 154 5e-33 seq8 95.1 4e-15 >seq18 Length=36757632 Score = 154 bits (170), Expect = 5e-33 Identities = 395/588 (67%), Gaps = 29/588 (5%) Strand=Plus/Plus Query 43554 CCATGAAGTAGATCCCGCGCT--GGA-CGTCGAGGCCGTAGAGCTTCTTCAGCGCCAGCG 43610 ||||||||||| ||| || ||| | |||| |||||| | || | ||| |||| Sbjct 22718198 CCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCGAGCG 22718257 Query 43611 CGTACACCGCCAGCTGGAAGTCATCCCCCGGCTTAAGGCCAGTCTTGTGGTCTACAACCA 43670 ||||||| | ||||||||||| || ||||| | || ||||||| ||| || Sbjct 22718258 CGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGGAC-- 22718315 Query 43671 TCG--GCTCACCGTCGAGGATCAGCACCGCGTCGATGAAGCCCCGGATCTGGATATCCCC 43728 ||| |||| ||||||| | | || ||||||||| | || || | | |||| | | Sbjct 22718316 TCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCGTC 22718375 Query 43729 GAGCATGAAGTCAAGATCCAGCTCGATCCCGGGCTTGCCGTCCGGGGTGCTCCACACCTC 43788 |||| || || | | |||||||||| | ||| | ||||||||||| ||| | ||| Sbjct 22718376 GAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATCTC 22718435 Query 43789 CAGCGAGGGATGGTTCTCGATCCAGTCGATGACCTTGTCCACCTGCTCCAGCCCGATCTT 43848 | | ||| |||| ||| ||| || ||| || ||||||||||| |||| | Sbjct 22718436 CTGGCCCGGA---GTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACGGT 22718492 Query 43849 CCAGCGTCGCTCCACGTCGTCG-GGACCGCGGTACGGCCCGGACGAGAACCACCAGTCGA 43907 | || ||||| | ||| ||| ||||| |||||| || ||| | |||||| |||| Sbjct 22718493 GTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCGA 22718551 Query 43908 GGTTCGGCGTGACGTCCGTGGACTCGCTGATACCTTCCTGGTACG-AGTCC---TTGAAC 43963 |||||| || | || ||| | ||| || | ||| || ||| | |||| Sbjct 22718552 AGTTCGGGGTCTCCTCGGTGAA--GGCTCCAACGTCGTTGG--CGTAGTGCCAACGGAAC 22718607 Query 43964 ACCTCGTACGCCTCTTCGCGGGTCATCGGGCCACCCGGCTCGAAACCCAGCCGGCGGAGC 44023 | || | ||||| || | |||| ||| || | | || |||| | | || | Sbjct 22718608 ATGTCCTTGGCCTCGTCAAGCGTCAGCGG--CATGCCGTAGGACTCCCATACCTC-GACC 22718664 Query 44024 ATGTAGTGCTCGGCCACCGCGTGGACCGCGGTCCCCTGCTGGAGCCACGCCGCCGGTCGA 44083 ||| || || ||||||| ||| ||||||||| | ||||| ||||| || || Sbjct 22718665 ------GCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGC 22718718 Query 44084 CGCCAGGCCTTGTCAATCCGGGCCAGCTTGTACGCCATCGGGCATTTC 44131 |||| ||||||| ||||| || |||||||||||||||||||| ||| Sbjct 22718719 TGCCACACCTTGTCGATCCGAGCGAGCTTGTACGCCATCGGGCACTTC 22718766 >seq9 Length=46179939 Score = 154 bits (170), Expect = 5e-33 Identities = 395/588 (67%), Gaps = 29/588 (5%) Strand=Plus/Minus Query 43554 CCATGAAGTAGATCCCGCGCT--GGA-CGTCGAGGCCGTAGAGCTTCTTCAGCGCCAGCG 43610 ||||||||||| ||| || ||| | |||| |||||| | || | ||| |||| Sbjct 16532146 CCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCGAGCG 16532087 Query 43611 CGTACACCGCCAGCTGGAAGTCATCCCCCGGCTTAAGGCCAGTCTTGTGGTCTACAACCA 43670 ||||||| | ||||||||||| || ||||| | || ||||||| ||| || Sbjct 16532086 CGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGGAC-- 16532029 Query 43671 TCG--GCTCACCGTCGAGGATCAGCACCGCGTCGATGAAGCCCCGGATCTGGATATCCCC 43728 ||| |||| ||||||| | | || ||||||||| | || || | | |||| | | Sbjct 16532028 TCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCGTC 16531969 Query 43729 GAGCATGAAGTCAAGATCCAGCTCGATCCCGGGCTTGCCGTCCGGGGTGCTCCACACCTC 43788 |||| || || | | |||||||||| | ||| | ||||||||||| ||| | ||| Sbjct 16531968 GAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATCTC 16531909 Query 43789 CAGCGAGGGATGGTTCTCGATCCAGTCGATGACCTTGTCCACCTGCTCCAGCCCGATCTT 43848 | | ||| |||| ||| ||| || ||| || ||||||||||| |||| | Sbjct 16531908 CTGGCCCGGA---GTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACGGT 16531852 Query 43849 CCAGCGTCGCTCCACGTCGTCG-GGACCGCGGTACGGCCCGGACGAGAACCACCAGTCGA 43907 | || ||||| | ||| ||| ||||| |||||| || ||| | |||||| |||| Sbjct 16531851 GTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCGA 16531793 Query 43908 GGTTCGGCGTGACGTCCGTGGACTCGCTGATACCTTCCTGGTACG-AGTCC---TTGAAC 43963 |||||| || | || ||| | ||| || | ||| || ||| | |||| Sbjct 16531792 AGTTCGGGGTCTCCTCGGTGAA--GGCTCCAACGTCGTTGG--CGTAGTGCCAACGGAAC 16531737 Query 43964 ACCTCGTACGCCTCTTCGCGGGTCATCGGGCCACCCGGCTCGAAACCCAGCCGGCGGAGC 44023 | || | ||||| || | |||| ||| || | | || |||| | | || | Sbjct 16531736 ATGTCCTTGGCCTCGTCAAGCGTCAGCGG--CATGCCGTAGGACTCCCATACCTC-GACC 16531680 Query 44024 ATGTAGTGCTCGGCCACCGCGTGGACCGCGGTCCCCTGCTGGAGCCACGCCGCCGGTCGA 44083 ||| || || ||||||| ||| ||||||||| | ||||| ||||| || || Sbjct 16531679 ------GCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGC 16531626 Query 44084 CGCCAGGCCTTGTCAATCCGGGCCAGCTTGTACGCCATCGGGCATTTC 44131 |||| ||||||| ||||| || |||||||||||||||||||| ||| Sbjct 16531625 TGCCACACCTTGTCGATCCGAGCGAGCTTGTACGCCATCGGGCACTTC 16531578 >seq8 Length=24646021 Score = 95.1 bits (104), Expect = 4e-15 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 11283 GGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTTGAGAACGACCCGGAACCCCGCGT 11342 ||||| ||||| |||| ||||||||| ||| || |||||||||| | || | | Sbjct 19508429 GGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCAGAT 19508370 Query 11343 CTTGCGGGGCTGGGCTCGCGTCGCGACCGGCAGGGAGACCTGCGCGTGGTGCCTGATGCT 11402 | || ||||||||| | ||||| ||||| | || || ||||| ||||| |||||||| Sbjct 19508369 CGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGATGCT 19508310 Query 11403 GATCAGCCGCGGACCCACGTACGTCCGGGCCGAGACCGCCGGTCTCGACCTTGACACGGA 11462 ||| ||| || ||| |||| | ||| || | || ||||| |||| ||||| || Sbjct 19508309 GATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACACCGA 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166710875899776