Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq82 138 1e-27 >seq82 Length=657493 Score = 138 bits (152), Expect = 1e-27 Identities = 284/419 (68%), Gaps = 4/419 (1%) Strand=Plus/Plus Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767 |||||| | || ||||| || | ||||| | |||||| | | || ||||||| || Sbjct 460819 ACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGC 460878 Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827 | | || ||||| | ||| | || |||||| ||| || ||||| |||||||| | | Sbjct 460879 CCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATA 460938 Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887 || || || ||||| | ||| || ||||||||||||||||| || ||| | || || | Sbjct 460939 TAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAAT 460998 Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947 |||| | |||||||| ||||| || |||| || | ||| ||| Sbjct 460999 GTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTA 461058 Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007 | || || ||| || || || || || ||||| ||||||| ||||| || || |||| Sbjct 461059 CTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAA 461118 Query 140008 TCGATGCTGCTGAGT--CGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACA 140065 | || || | ||| |||| ||| | || ||||||| | || || | |||||| Sbjct 461119 TAGA-ACTAGT-AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACA 461176 Query 140066 CGAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAA 140124 || || ||||| ||| | || || | |||| | |||||| || || || || |||| Sbjct 461177 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAA 461235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535113995880960