Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq82 167 3e-36 >seq82 Length=657493 Score = 167 bits (184), Expect = 3e-36 Identities = 280/404 (69%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 27212 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGGT 27271 ||||||||| ||||| |||| ||| || |||| || || || ||||||||| | || Sbjct 461266 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 461207 Query 27272 GCTCGTACTCCAACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGTGATTCG 27328 | | | ||||| ||||| || || ||| | |||| | |||||| | |||| Sbjct 461206 GTTAGAACTCCTACTCGACAATT---TAGCTCATGTGTTTTAATTGAATGTGATGATAAT 461150 Query 27329 TTAAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGT 27388 || | ||||||||| ||| | || ||| | ||||| ||||| ||||||| || Sbjct 461149 CTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGA 461090 Query 27389 ATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTT 27448 || ||||| || | ||| | ||||||||| |||| | || | | || |||| Sbjct 461089 ATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCA 461030 Query 27449 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 27508 ||||| ||| |||||| || | |||||||| |||| ||| |||||||| |||||| Sbjct 461029 TTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCT 460970 Query 27509 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 27568 ||||| || || | ||||| || || || | |||||| || ||||| || ||| | Sbjct 460969 CAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATT 460910 Query 27569 GAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAA 27612 || | |||||||| | |||||||||| || | || ||||| Sbjct 460909 GAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAA 460866 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 29187 AAGTATCAATCATTATTAGATTCTATCCAAGGCAGA-GCCCCATCTGCGGTACTTATGGC 29245 || |||||| |||||||||| ||||| ||||| ||| | || | | | | || | | Sbjct 459269 AAATATCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCTT-TTCTACC 459211 Query 29246 ACTGATTTCTGACCCTTCATTAGATACATGGGTTGCAACATGGACATTCAGTGAAACTAT 29305 | | |||||| || |||||| || ||| ||| ||||||| | || |||||||| Sbjct 459210 AATTATTTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCGGAAACTAT 459151 Query 29306 TCACTCTCGTTCATATACTCATATCATGCGAAATCTTTATACAGACCCATCTAAGGTATT 29365 |||||| ||||| ||||||||||| || ||||| || || |||||| |||| Sbjct 459150 TCACTCACGTTCTTATACTCATATTATTAGAAATATTGTTAATTCTCCATCTTTAATATT 459091 Query 29366 TGATGAGATT 29375 |||||| ||| Sbjct 459090 TGATGATATT 459081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541136292295680