Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_024143.1 Length=53255 Score E Sequences producing significant alignments: (Bits) Value seq18 132 2e-26 seq9 132 2e-26 seq8 132 2e-26 >seq18 Length=36757632 Score = 132 bits (146), Expect = 2e-26 Identities = 391/600 (65%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 44988 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45038 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 45039 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACTCCGTACAGCTGTTTCAACGCC 45092 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 45093 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 45152 ||||||||||| ||||||||||||| || || || | | |||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 45153 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCGCGGATCTCTATCCCA 45212 || | | ||| || ||||||||||| ||||| | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 45213 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 45272 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 45273 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 45332 || ||| | || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718434 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 45333 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAAGCGAACCACCACCCC 45392 | || ||||||||||| | ||| |||||| || || ||||||| | Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 45393 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 45448 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 22718606 Query 45449 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGACAGCATGTATTT 45508 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 22718666 Query 45509 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45568 |||||| || ||||||| | | || |||||| |||||||||||||||| || |||||| Sbjct 22718667 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 132 bits (146), Expect = 2e-26 Identities = 391/600 (65%), Gaps = 26/600 (4%) Strand=Plus/Minus Query 44988 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45038 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 45039 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACTCCGTACAGCTGTTTCAACGCC 45092 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 45093 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 45152 ||||||||||| ||||||||||||| || || || | | |||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 45153 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCGCGGATCTCTATCCCA 45212 || | | ||| || ||||||||||| ||||| | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 45213 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 45272 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 45273 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 45332 || ||| | || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531910 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 45333 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAAGCGAACCACCACCCC 45392 | || ||||||||||| | ||| |||||| || || ||||||| | Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 45393 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 45448 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 16531738 Query 45449 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGACAGCATGTATTT 45508 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 16531678 Query 45509 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45568 |||||| || ||||||| | | || |||||| |||||||||||||||| || |||||| Sbjct 16531677 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 >seq8 Length=24646021 Score = 132 bits (146), Expect = 2e-26 Identities = 249/361 (69%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 9909 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGATCTACCTCGCAACGACCGACCCCTG 9968 ||||||||||| ||||| | ||||||||||| || || |||||||| | | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 9969 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCGCGTGAGCGGATGCA 10027 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 10028 GCAGTCGGAGACGCGCGGCGACGCGCTGACCCACCTGACGCTACGCG-CGGTGCGCGAGG 10086 |||| | || | | | ||| | ||| | ||||| || ||| | |||||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGAAG 19508431 Query 10087 TGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTTGAGAACGACCCGGAACCCCGCG 10146 |||||| ||||| |||| ||||||||| ||| || |||||||||| | || | Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCAGA 19508371 Query 10147 TCTTGCGGGGCTGGGCTCGCGTCGCGACCGGCAGGGAGACCTGCGCGTGGTGCCTGATGC 10206 || || ||||||||| | ||||| ||||| | || || ||||| ||||| ||||||| Sbjct 19508370 TCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGATGC 19508311 Query 10207 TGATCAGCCGCGGACCCACGTACGTCCGGGCCGAGACCGCCGGCCTCGACCTTGACACGG 10266 |||| ||| || ||| |||| | ||| || | || || || |||| ||||| | Sbjct 19508310 TGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACACCG 19508251 Query 10267 A 10267 | Sbjct 19508250 A 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170291617389504