Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_024146.1 Length=56702 Score E Sequences producing significant alignments: (Bits) Value seq1048 95.1 4e-15 >seq1048 Length=3623 Score = 95.1 bits (104), Expect = 4e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 54884 CAAACAGCGCGTAAAATTGGTGGCGCCTCATTCGATGGTACTGCTGACGTCAATCTTCCA 54943 ||||| || || | |||||||| | || ||||| || | || ||||||| || Sbjct 2330 CAAACCGCTCGCCATATTGGTGGTGTTAGTTTTGATGGCTCTACCGATATCAATCTGCCT 2271 Query 54944 GGTGTTAACATTCAGGGTAATCAGAACACAACTGGTAACGCGGCAACTGCCACCAAACTA 55003 ||||| || |||||||||||||||||||| |||||||| || || ||||| |||||||| Sbjct 2270 GGTGTAAATATTCAGGGTAATCAGAACACCACTGGTAATGCCGCCACTGCAACCAAACTG 2211 Query 55004 CAGAC 55008 || || Sbjct 2210 CAAAC 2206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181321837152768