Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_024148.1 Length=50101 Score E Sequences producing significant alignments: (Bits) Value seq18 547 2e-151 seq8 248 3e-61 seq9 192 2e-44 seq1 105 2e-18 >seq18 Length=36757632 Score = 547 bits (606), Expect = 2e-151 Identities = 661/904 (73%), Gaps = 68/904 (8%) Strand=Plus/Plus Query 33828 GTCTGGAACTGGTCTTCGTCCAAGAGCGAGAACCGGATTCGGCGGTTGAAGTACTTGGCG 33887 ||| |||||||||| | ||||| | |||||||||||| || ||| |||||||| || | Sbjct 22717045 GTCAGGAACTGGTCGTTGTCCAGCACCGAGAACCGGATGCGCCGGATGAAGTACCGGGAG 22717104 Query 33888 AAGATCGGGTGGATACCCTCACTGACACCAGGCAGCTTCGCGATGGTCCCCGTGGGGGCC 33947 |||||||||||||||||||||||||| ||||||| ||||||||||||||| || |||||| Sbjct 22717105 AAGATCGGGTGGATACCCTCACTGACTCCAGGCATCTTCGCGATGGTCCCTGTCGGGGCC 22717164 Query 33948 ACCGTCCGCTTCTTCACCGGCACCGGGATGCGAAGCTCATGGGCGAACCTCTCAGCGGC- 34006 ||||| |||||||| |||||||||||||| || | ||||||| |||| ||| || || Sbjct 22717165 ACCGTGCGCTTCTTGACCGGCACCGGGATCCGCAACTCATGGCTGAACTCCTCGGCCGCT 22717224 Query 34007 CTGATCGACCTCAGATGCCAGTTCCCGCAGCAGGTTCCGG--AACCACCGGTCCTTGGGT 34064 ||| |||||||||| |||| ||||||| || ||| |||| | ||| |||| Sbjct 22717225 CTG-TCGACCTCAGCGGCCATCTCCCGCA--AGAAAGCGGTGAACCGCTTGTCTCCGGGT 22717281 Query 34065 GCCTCGGAGTACTTCTTCCGAGCCATCGCCAGGAACGAGGCCACGCCCAGGTGGCCGACG 34124 |||| || ||| | | | || |||| | |||||||| || ||||| || || Sbjct 22717282 GCCTGCGAATACCTACGGCCTGTCAGGGCCAAATAGGAGGCCACTCCGAGGTGCCCAACA 22717341 Query 34125 CCGATGCGCCGGTTCCGGTCCAGCACCTCCCTGGACTTCGGGTCTGCCACAGGCGAGAAC 34184 |||||||||||||| || ||||| ||||| | | |||||| || || || | |||||| Sbjct 22717342 CCGATGCGCCGGTTGCGATCCAGAACCTCTCGGCTCTTCGGATCAGCGACCGCTGAGAAC 22717401 Query 34185 GTCGCCCGCATCAGGAACCGAGTCATCAGCCGGTGCGCCCGAAGCAGGTCGAGGTAGTCG 34244 |||||||| ||||||||||| |||||||| ||||| || || | |||||||| ||||||| Sbjct 22717402 GTCGCCCGGATCAGGAACCGCGTCATCAGACGGTGGGCTCGGATCAGGTCGATGTAGTCG 22717461 Query 34245 ACCTTGCCGTTCTCCTTGACGAACCCGGCCAGGTTGATGTGGCCCAGGTTGCAGGGCTCC 34304 ||| ||| || |||||||| | || ||||||||||| || ||||||||||||||| Sbjct 22717462 GTCTTCCCGGCGTCGGTGACGAACGCCGCGAGGTTGATGTGCCCTAGGTTGCAGGGCTCC 22717521 Query 34305 CACGCTTCGAGCGTGATCTCCCCGCACGGGTTGGTGCAGATGACCTCGTTGGGCTCGCCC 34364 |||| || ||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 22717522 CACGGCTCCAGCGTGATCTCCCCGCACGGGTTGGTGCAGACGACCTCGTTGGGCTCACCG 22717581 Query 34365 TTGTTCGACAGCGACGAGTCCCAGAACCCAGGCTCGCCGTTGTTGACCATGCCCTTGGTG 34424 ||| ||||| |||||| | ||| |||||||||||| || |||| || | Sbjct 22717582 ACGTTGGACAGGCTGCTGTCCCACATCCCCGGCTCGCCGTTGCGTACGGCTCCCTCGGAG 22717641 Query 34425 ATGCCGTCCAGGACGTACAGGGCGTT------GCCGCTGTTG-GCGG--CGACCGCATC- 34474 | | | ||| || | || || || |||| |||| |||| | | | Sbjct 22717642 AGAGCCTTCAGCACCCGGTGTGCCTTCGTGGAGCGCGGGTTGAGCGGGTCGACAGGAGCC 22717701 Query 34475 -----------CCAGAAGTCCTGATCGACCTCGACCGAGATGTTGGTCGTCCAGTGCGAA 34523 |||||| | | || ||||||||||||||||| || |||||||| || Sbjct 22717702 TTGGCCAGGCTCCAGAACGCATCGTCCACCTCGACCGAGATGTTCGTGGTCCAGTGAGAT 22717761 Query 34524 CCGGTGTCCTGCTTGAT---------CGT---CAG------------------------- 34546 ||| ||||||||||||| ||| ||| Sbjct 22717762 CCGCTGTCCTGCTTGATGTTGGTGAACGTCTCCAGTGAGATCCGCTGTCCTGCTTGATGT 22717821 Query 34547 ----GAACTGGTCGATCTGCGGGTCGTTCCAGTGCATCATCGCCATGCGCGCCGACCGGC 34602 |||| ||| |||| ||| ||||||||||||||||||||| |||||||||| Sbjct 22717822 TGGTGAACGTCTCGCCCTGCCAGTCCGCCCAGTGCATCATCGCCATGCGAGCCGACCGGC 22717881 Query 34603 GCACACCACCAGCGACCACACACTGTGCGATGGCGTGGTCGATCTCCATCGCGTCCAAGC 34662 | ||||| || || ||||||||||| |||||||||||||||||||||||||| || | | Sbjct 22717882 GAACACCTCCGGCCACCACACACTGCGCGATGGCGTGGTCGATCTCCATCGCATCGAGAC 22717941 Query 34663 CGGT 34666 |||| Sbjct 22717942 CGGT 22717945 Score = 192 bits (212), Expect = 2e-44 Identities = 517/780 (66%), Gaps = 53/780 (7%) Strand=Plus/Plus Query 42543 GGGCAGGCGTAGCTCACGTCGCAGAACCGGCAGGTGTCCGGGTCGGGTTTCGGATCGAAC 42602 ||||| |||| ||| || ||||| ||| ||||||| || || ||| |||||| Sbjct 22718023 GGGCAACTGTAGGACACATCACAGAATTTGCATTTGTCCGGTTCCGGCAACGGGTCGAAC 22718082 Query 42603 CTCTCGGCCCGGATGTTCTCGTCCAGCTCCTTGAACTTCTCGGTGACGCGCTCGCGGGTC 42662 || ||| ||| || || | | | ||||| |||||||| | || || ||| Sbjct 22718083 ATCGAGGCTGCGATACCTTCCTCGACCCTGTGGAACTCCTCGGTGATGGCTTCACGCGTC 22718142 Query 42663 CACTCGGTGAGGTCGAACGGATAGGTCGGCTT---------GCCGGTCCTGCCCATCC-- 42711 |||| || |||||| | || | ||||||||| ||| || | |||| | Sbjct 22718143 CACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTCCCCACCATG 22718202 Query 42712 -AGTAGTCACCGGAC---GGTGCGAAGACTCCGTAC-TCGTCCTCCAGTGCGACCTTGTA 42766 ||||||| |||| | || || ||| ||||| || || | | |||| | ||| Sbjct 22718203 AAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCG-CGACCGCGAGCGCGTA 22718261 Query 42767 GACACCGAGCTGGAAGTCGTCACCGGGCTGGTTGCCGGTCTTGTGGTCTCGGACGTAAA- 42825 || |||||||||||||||||||| || ||||| |||||||||| ||| ||||| || Sbjct 22718262 CACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGGACTCGAAG 22718321 Query 42826 --CCTCGTCG-CCACATCCGGATTGGAGCACGGCGTCGATGTAGCCTCGGACCAAGACTC 42882 || ||||| |||| || |||||||||||||| || || |||| || | Sbjct 22718322 CTCCCCGTCGACCAC----------GACGACGGCGTCGATGTATCCGCGAACCAGGATCC 22718371 Query 42883 CGTCCAGGTCGATGTCGAACTCAAGCTCGATGCCTGGCGTCCCATCCTCTGCGATCCAGA 42942 |||| || ||||| ||||| | |||||||| ||||||| || ||| | | ||||| Sbjct 22718372 CGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGA 22718431 Query 42943 TGACCTCGTCGCGATGGCTGGTGGCCCAGTTGATGTACTTCTCGACCTGTTCCAGGCCGA 43002 | ||| | | || | || | ||| || | ||||||||||||| |||||||||| Sbjct 22718432 TCTCCT-GGCCCGGAGTCTCCCG--CCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGA 22718488 Query 43003 TGTCATACCTTCGTGCGATGTCAAGTTGACCGCCGTAACGACCACTGGCGA--ACCACCA 43060 | |||| || ||||||| | |||||| ||| ||||| | | | |||||| Sbjct 22718489 CGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCA--GACCACGTCCACCA 22718546 Query 43061 CTCGAAGTTCGGCGTGATCTCGCACGCCGCGTCGATGTGCTTCTTGTAGGACTCCTTGAA 43120 |||||||||||| || |||| || | | || || |||| | ||| Sbjct 22718547 CTCGAAGTTCGGGGTCTCCTCGGTGAAGGCTCCAACGTCGTTGGCGTAGTGCCAACGGAA 22718606 Query 43121 GACTTCCTGGGCTTCTTCGAGTGAGAGGGAGCGCCCCG-ACCGCTCCCATGCCTCGATGG 43179 | |||| ||| || || || | || | || ||| | ||||||| |||||| | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCG-GCATGCCGTAGGACTCCCATACCTCGACCG 22718665 Query 43180 CTT---------CGTGGACCGCACTACCCTGCGCTGTCCACGCGGCCGGCCTCTGCCACG 43230 | | |||||| |||| | ||||||| ||| || || |||| ||||||| Sbjct 22718666 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 22718725 Query 43231 CCTTGTCGATCCTCGATAGCTTGTAGGCGTAGGGGCAC--CGTTCGTACTGTTTGAGCTG 43288 |||||||||||| | |||||||| || |||||| ||| |||||| |||| ||| Sbjct 22718726 CCTTGTCGATCCGAGCGAGCTTGTACGCCATCGGGCACTTCGT--GTACTGGTTGATCTG 22718783 Score = 84.2 bits (92), Expect = 7e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 43846 CCATATCATCCTCCCCTCGTCGGTTAAGTCCGTGTACTCGTTGACCCGGATCAACAGGTC 43905 ||| |||||| ||||||||||| |||| |||| |||||||||||||||||||||||| Sbjct 22719327 CCAGATCATCTCTCCCTCGTCGGTCAAGTTGGTGTGCTCGTTGACCCGGATCAACAGGTC 22719386 Query 43906 GCCGTCCTC 43914 | ||||||| Sbjct 22719387 GTCGTCCTC 22719395 >seq8 Length=24646021 Score = 248 bits (274), Expect = 3e-61 Identities = 596/899 (66%), Gaps = 52/899 (6%) Strand=Plus/Minus Query 11125 CCTGAAGCCGGAACAGGCGCAGGACTACTTCAAGGAGATCGAGAAGACCTCCGTCGTTCA 11184 |||| |||| || |||||| |||| |||||| ||| |||||||||||| |||| || Sbjct 19507246 CCTGGAGCCCGAGCAGGCGAAGGATTACTTCGCCGAGGCCGAGAAGACCTCGATCGTCCA 19507187 Query 11185 GCGGATCGCTCGGAAGATTCCGATGGGTCCGACCGGCATCGCCATCCCGCACTGGACCGG 11244 || | |||| | |||| | ||||||||| | || ||| |||||||||||| ||| Sbjct 19507186 GCAGTTCGCCCAGAAGGTGCCGATGGGTACCACGGGCCAGAAGATCCCGCACTGGGTCGG 19507127 Query 11245 TGCTGTCTCGGCGTCGTGGACCGGTGAGGCCGAGCGCAAGCCCCTGACCAAGGGTTCGTT 11304 | || || ||||| |||||||| || |||||| | |||||||| | Sbjct 19507126 CGACGTGAGTGCCCAGTGGATCGGTGAGGGTGACATGAAGCCCATCACCAAGGGCAACAT 19507067 Query 11305 CGGTCAGAAGGAACTGAAGCCGGTGAAGATCACCACGATCTTCGCCGAGTCGGCTGAAGT 11364 | | || | ||| |||||| | |||||||||| | ||| || || Sbjct 19507066 GACTTCGCAGACCATCGCGCCCCACAAGATCGCGACGATCTTCGTGGCGTCTGCGGAGAC 19507007 Query 11365 CGTGCGTCTCAACCCGCTGGGCTACCTGGAGACCATGCGGACCAAGATCGCTGAGGCCAT 11424 ||| ||| |||||| |||||||| |||||||| |||||| | || ||| | Sbjct 19507006 CGTCCGTGCCAACCCCGCCAACTACCTGGGAACCATGCGTACCAAGGTGGCGACCGCCTT 19506947 Query 11425 CGCGCTGAAGTTCGACCAGGCCGCGATCCACGGCATCAGCAAGCCGAGCGAGTTCGTGGG 11484 |||| || ||||||| || ||||| ||||||| | || ||| ||| | Sbjct 19506946 CGCGATGGCGTTCGACGGCGCGGCGATGCACGGCACCGACAGCCCG------TTCCCGAC 19506893 Query 11485 CTACCTGGCCGAGACCACGCAGGAGGTCTCGCTGGTCGACACCNNNNNNNNNNNNNCTGG 11544 |||| | | ||||||| ||| ||||| | | |||||| || Sbjct 19506892 CTACATCGGTCAGACCACCAAGGCCATCTCGATTGCTGACACCACCGG---------TGC 19506842 Query 11545 CGCGCAGGGCAACGCCTACCTGGCGGTCAACGCCGGTCTGCAGACC-CTGGTCGACGCTG 11603 | || | ||| | | |||| || |||| | ||| || | ||||| ||| | Sbjct 19506841 CACGACCGTGTACGACCAGGTGGCCGTGAACGGC---CTG-AGCCTGCTGGTGAACGACG 19506786 Query 11604 GCAAGCGGTGGACCGGCACGCTGCTCGACAACGTGACCGAGCCCATCCTGAACACCGCTG 11663 ||||| ||||||| ||| || || ||| || | |||||||| ||||||||| ||| Sbjct 19506785 GCAAGAAGTGGACCCACACCCTTCTGGACGACATCACCGAGCCGATCCTGAACGGCGCGA 19506726 Query 11664 TCGACGCCAACGGTCGTCCGCTGTTCGTGGAGAGCACCTACACCGAGCAGGTCG-GTGCC 11722 ||| |||||||| ||||||||| | ||| |||||| ||| | || | ||| Sbjct 19506725 AGGACCAGAACGGTCGCCCGCTGTTCATCGAGTCGACCTACGGTGAG---GCCGCGAGCC 19506669 Query 11723 A--TCCGTGAGGGCCGCATCCTGGGTCGTCCGACCTACGTCGCGGACAACGTGGTCAACG 11780 ||||| |||||| ||| | | ||||||||| | || ||| |||| || | | Sbjct 19506668 CGTTCCGTTCGGGCCGGATCGTCGCCCGTCCGACCATCCTCAGCGACCACGTCGTGGAGG 19506609 Query 11781 GCACGGCCGGTAGCCGCGTCGTGGGCATCATGGGCGACTTCAGCCAGGTCGTCTGGGGCC 11840 |||| | || || ||| ||||||| |||||| |||| || ||||||||| Sbjct 19506608 GCAC----------CACG--GTCGGCTTCATGGGTGACTTCTCCCAGCTCATCTGGGGCC 19506561 Query 11841 AGATCGGTGGTCTGAGCTTCGACGTGACCGACCAGGCCACGCTCGACTTCGGCGAGGAAT 11900 ||||||| |||||| |||||||||||| || ||||| || || || | Sbjct 19506560 AGATCGGCGGTCTGTCCTTCGACGTGACGGATCAGGCGACCCTGAACCT----------- 19506512 Query 11901 CGGGCGGCGTGTGGGTGCCC-AAGCTCGTCTCGCTGTGGCAGCACAACATGGTCGCCGTC 11959 |||| ||| | | |||| || ||||||||||||||||||||||| | ||||| ||| Sbjct 19506511 -GGGCACCGT-CGAGAGCCCGAACTTCGTCTCGCTGTGGCAGCACAACCTCGTCGCAGTC 19506454 Query 11960 CGTTGCGAGGCTGAGTTCGCGTTCATGGTCAACGACAAGGACGCCTTCGTCAAGCTGAC 12018 ||| ||||||||||| ||||||| ||||||| || || |||||| ||||| Sbjct 19506453 CGTGTCGAGGCTGAGTACGCGTTCCACTGCAACGACGCCGAGGCGTTCGTCGCTCTGAC 19506395 Score = 165 bits (182), Expect = 3e-36 Identities = 382/573 (67%), Gaps = 37/573 (6%) Strand=Plus/Minus Query 9974 AGTCGAAATGGCTGGCCGGAAACAGATCATCCGCGCTGTGGAGAACGATCCACAGTCTGG 10033 ||| || ||||| || || |||||||||| ||||||| ||||||| ||| || Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCA 19508373 Query 10034 AGTGGTCAAGGGCTGGGCGCGGGTCGCGACTGGCCGAGAGACCTGTTACTGGTGCCTGAT 10093 | || |||||||||||| ||||||| || || || || || || |||||| ||||| Sbjct 19508372 GATCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGAT 19508313 Query 10094 GCTGATCAGCCGAGGACCCGTCTACCTCGGGGCTGACACAGCAGGCTTAGACCTCGATGA 10153 |||||| ||| || |||| ||||| ||| || | | || | ||||||| Sbjct 19508312 GCTGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACAC 19508253 Query 10154 CACGACGGCAGCCGAAAT---GATCGCTGCCGGT---------GAGGATGTCAGCGAGTA 10201 | ||| | | ||| | || || || || ||| | || |||| | Sbjct 19508252 CGAGACCGTGGTCGACCTCTGGAACGAGGCTGGCCGCGATCTGGAGAAGTTCCGCGAAGA 19508193 Query 10202 ------------CATGCGGCAGTGGCATGACGGGTGCGACTGCAAGGTGGTGCCGGTCTA 10249 ||| | ||||||| | |||||||||||| ||||||||| |||| Sbjct 19508192 GACCAAGCCCCACATCGAGGAGTGGCACGCAGGGTGCGACTGCCTGGTGGTGCCTGTCTT 19508133 Query 10250 CGACCGACGCAACTGGCCCGGTTACGACGCATGGAAGCGAGCCGAGCAGTTGTGGATCGA 10309 |||| ||||||||||| | | |||| | | || || |||| | |||||||| Sbjct 19508132 CGACGTGGAGAACTGGCCCGGAAAGGCCGCACAGGAACGCGCTCTGCAGCTCTGGATCGA 19508073 Query 10310 GGCCGGTCGAGAGGCTGACCGGCTCATCGAGTCCGGGAAGGCCCGCACCACCAACGTGAA 10369 || || ||| || || |||||| | || || ||||||||| ||| |||| ||| Sbjct 19508072 CGCTGGGAAAGAAGCCAGCCAGCTCATTGCATCTGGCAAGGCCCGCTCCAAAAACGAGAA 19508013 Query 10370 CAAGGAGACGCAGAACGCGCTCCGTCGTCGTCTTG-AGAGAGGCGACGTTTCCATGTCCG 10428 |||||||||| ||||| |||||||| || |||| | | ||||| | | ||||||| Sbjct 19508012 CAAGGAGACGATCAACGCTCTCCGTCGCCG-CTTGTATCGCGGCGAGTTCGCAATGTCCG 19507954 Query 10429 AGTTCGCTGCTCTCGCAGCGTAATTCAACCATCCAAGGCCCCCAGGTGGGGCTGTCAA-C 10487 | | | || ||||| ||||||| || | || ||||||||||| |||| | Sbjct 19507953 ACTAC---GCACTCGCTGCGTAAT----CCCCCGAA---CCCCAGGTGGGTTCATCAACC 19507904 Query 10488 ACGCCCAGGAGGCAAACACCAATGTCTGACACC 10520 | ||||||||||| || || ||||| |||||| Sbjct 19507903 ATGCCCAGGAGGCGAAAACACATGTCCGACACC 19507871 >seq9 Length=46179939 Score = 192 bits (212), Expect = 2e-44 Identities = 517/780 (66%), Gaps = 53/780 (7%) Strand=Plus/Minus Query 42543 GGGCAGGCGTAGCTCACGTCGCAGAACCGGCAGGTGTCCGGGTCGGGTTTCGGATCGAAC 42602 ||||| |||| ||| || ||||| ||| ||||||| || || ||| |||||| Sbjct 16532321 GGGCAACTGTAGGACACATCACAGAATTTGCATTTGTCCGGTTCCGGCAACGGGTCGAAC 16532262 Query 42603 CTCTCGGCCCGGATGTTCTCGTCCAGCTCCTTGAACTTCTCGGTGACGCGCTCGCGGGTC 42662 || ||| ||| || || | | | ||||| |||||||| | || || ||| Sbjct 16532261 ATCGAGGCTGCGATACCTTCCTCGACCCTGTGGAACTCCTCGGTGATGGCTTCACGCGTC 16532202 Query 42663 CACTCGGTGAGGTCGAACGGATAGGTCGGCTT---------GCCGGTCCTGCCCATCC-- 42711 |||| || |||||| | || | ||||||||| ||| || | |||| | Sbjct 16532201 CACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTCCCCACCATG 16532142 Query 42712 -AGTAGTCACCGGAC---GGTGCGAAGACTCCGTAC-TCGTCCTCCAGTGCGACCTTGTA 42766 ||||||| |||| | || || ||| ||||| || || | | |||| | ||| Sbjct 16532141 AAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCG-CGACCGCGAGCGCGTA 16532083 Query 42767 GACACCGAGCTGGAAGTCGTCACCGGGCTGGTTGCCGGTCTTGTGGTCTCGGACGTAAA- 42825 || |||||||||||||||||||| || ||||| |||||||||| ||| ||||| || Sbjct 16532082 CACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGGACTCGAAG 16532023 Query 42826 --CCTCGTCG-CCACATCCGGATTGGAGCACGGCGTCGATGTAGCCTCGGACCAAGACTC 42882 || ||||| |||| || |||||||||||||| || || |||| || | Sbjct 16532022 CTCCCCGTCGACCAC----------GACGACGGCGTCGATGTATCCGCGAACCAGGATCC 16531973 Query 42883 CGTCCAGGTCGATGTCGAACTCAAGCTCGATGCCTGGCGTCCCATCCTCTGCGATCCAGA 42942 |||| || ||||| ||||| | |||||||| ||||||| || ||| | | ||||| Sbjct 16531972 CGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGA 16531913 Query 42943 TGACCTCGTCGCGATGGCTGGTGGCCCAGTTGATGTACTTCTCGACCTGTTCCAGGCCGA 43002 | ||| | | || | || | ||| || | ||||||||||||| |||||||||| Sbjct 16531912 TCTCCT-GGCCCGGAGTCTCCCG--CCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGA 16531856 Query 43003 TGTCATACCTTCGTGCGATGTCAAGTTGACCGCCGTAACGACCACTGGCGA--ACCACCA 43060 | |||| || ||||||| | |||||| ||| ||||| | | | |||||| Sbjct 16531855 CGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCA--GACCACGTCCACCA 16531798 Query 43061 CTCGAAGTTCGGCGTGATCTCGCACGCCGCGTCGATGTGCTTCTTGTAGGACTCCTTGAA 43120 |||||||||||| || |||| || | | || || |||| | ||| Sbjct 16531797 CTCGAAGTTCGGGGTCTCCTCGGTGAAGGCTCCAACGTCGTTGGCGTAGTGCCAACGGAA 16531738 Query 43121 GACTTCCTGGGCTTCTTCGAGTGAGAGGGAGCGCCCCG-ACCGCTCCCATGCCTCGATGG 43179 | |||| ||| || || || | || | || ||| | ||||||| |||||| | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCG-GCATGCCGTAGGACTCCCATACCTCGACCG 16531679 Query 43180 CTT---------CGTGGACCGCACTACCCTGCGCTGTCCACGCGGCCGGCCTCTGCCACG 43230 | | |||||| |||| | ||||||| ||| || || |||| ||||||| Sbjct 16531678 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 16531619 Query 43231 CCTTGTCGATCCTCGATAGCTTGTAGGCGTAGGGGCAC--CGTTCGTACTGTTTGAGCTG 43288 |||||||||||| | |||||||| || |||||| ||| |||||| |||| ||| Sbjct 16531618 CCTTGTCGATCCGAGCGAGCTTGTACGCCATCGGGCACTTCGT--GTACTGGTTGATCTG 16531561 Score = 84.2 bits (92), Expect = 7e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 43846 CCATATCATCCTCCCCTCGTCGGTTAAGTCCGTGTACTCGTTGACCCGGATCAACAGGTC 43905 ||| |||||| ||||||||||| |||| |||| |||||||||||||||||||||||| Sbjct 16531017 CCAGATCATCTCTCCCTCGTCGGTCAAGTTGGTGTGCTCGTTGACCCGGATCAACAGGTC 16530958 Query 43906 GCCGTCCTC 43914 | ||||||| Sbjct 16530957 GTCGTCCTC 16530949 >seq1 Length=46747018 Score = 105 bits (116), Expect = 2e-18 Identities = 218/316 (69%), Gaps = 15/316 (5%) Strand=Plus/Minus Query 458 CTCCCAGACGACTGGGAGGAGAACTACCGGCAGCCCGTTCTGCGGGCAGCCGGATACCGG 517 || || || ||||||||| ||| ||||||| || || || || ||||| | | | Sbjct 34905277 CTACCGGAGGACTGGGAGCTGAATTACCGGCTCCCGGTCCTTTCTGCTGCCGGGTGGCTG 34905218 Query 518 TGTCAGATTCGCAGACCCGGTTGCCTCGGGAAGGCAACCGATGTGGATCACATCCGCAG- 576 ||| || | | | ||||| ||| || || || ||||| || || |||| | || Sbjct 34905217 TGTGAGGTCGACGGCCCCGGCTGCGTCCGGGCTGCCACCGACGTAGACCACAA--GAAGC 34905160 Query 577 -AGGAGATGATCACCGTCTCAG--CAACCTGCAGGCAGCGTGCCGTCGCTGCCACGGGAA 633 ||| | || ||| || | | ||||||||| || |||||| ||||||||| || Sbjct 34905159 CAGGGAACGACCAC--TCGCGGTCCAACCTGCAAGCGATCTGCCGTGTCTGCCACGGCAA 34905102 Query 634 GAAGTCATCCGCTGAGGGCCATGCCCGGAAGCGCGAGTTACGAGCCAGGAGGAAGCGACC 693 ||||||| ||||||||||| ||||| ||| || | ||| ||||||||||||| Sbjct 34905101 GAAGTCAGCCGCTGAGGGCGTAGCCCGACGGCGGGAACTCAAGGCCCGGAGGAAGCGACC 34905042 Query 694 AACCGAACGCCATCCCGGCTCCCGTTGATGCAGCGGGCCGGGAGCCCGCTTTTCACCCAG 753 | ||||||| || || ||| | | |||||||| || ||| || | ||||||| Sbjct 34905041 AGAACAACGCCACCCTGG---GCGTCG-TTAAGCGGGCCAGGTGCCTGC--TCCACCCAG 34904988 Query 754 GAGGTGTCAGGTGGGC 769 |||||| | |||||| Sbjct 34904987 GAGGTGAC-TGTGGGC 34904973 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 3804 CGTAGCTCAATTGGAAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTCGAGCCCTGC 3863 |||||||||||||| ||||||| |||||||||||||||||| | ||||||||| |||| Sbjct 34903326 CGTAGCTCAATTGGTAGAGCAGTGGTCTCCAAAGCCGCCGGTTCCAGGTTCGACTCCTGG 34903267 Query 3864 CGCGTCTGCTAC 3875 || || ||| || Sbjct 34903266 CGTGTATGCCAC 34903255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160198982305856