Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_024368.1 Length=50610 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 5e-14 >seq8 Length=24646021 Score = 91.5 bits (100), Expect = 5e-14 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 10431 TTCTACGACTCGCAGCG--GGCTCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCC 10488 ||||||||||| ||||| | ||| ||||||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 10489 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 10547 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 10548 CAGCAGGCGGACACCCGCGGGGACGCGCTGACGCACCTGACGCT-GCGAGCCGTCCGCGA 10606 |||||| ||| | | | ||| | || | ||||| | |||| | || ||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTGGCGA-CAGTGCGCGA 19508433 Query 10607 GGTGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTCGAGAACGACCC 10657 ||||||| ||||| |||| ||||||||| ||| ||| |||||||||| Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161827755691264