Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq82 154 4e-33 >seq82 Length=657493 Score = 154 bits (170), Expect = 4e-33 Identities = 247/349 (71%), Gaps = 7/349 (2%) Strand=Plus/Minus Query 38194 ATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAG 38253 ||||| || ||||||||||| || || || | ||||| || | ||||||||||| || Sbjct 206203 ATGGCTAGTAGAGGTGTAAATAAAGTTATTCTGATTGGGCATTTAGGTCAAGATCCTGAA 206144 Query 38254 GTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTT 38313 || || ||| | || | || || || | || || ||| ||||||| || || | Sbjct 206143 GTTCGTTATATGCCTAATGGTAATGCGGTAGTGAATATGACATTAGCAACTTCAGAAAAT 206084 Query 38314 TGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTG 38373 ||| ||||| | || ||| | ||||| ||||| || ||||| || | ||| Sbjct 206083 TGGAAAGATAAAAATACTGGAGAAAATAAAGAAAAAACTGAATGGCATAGAATAGTTTTA 206024 Query 38374 TTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATT 38433 ||||| || | |||||| |||| |||||||| ||||||||||| ||||| || |||||| Sbjct 206023 TTTGGTAAATTAGCTGAAATTGCAGGCGAATATCTTCGAAAAGGTTCTCAAGTATATATT 205964 Query 38434 GAAGG-CCAGCTTG-AAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGACCGATACACAA 38491 ||||| || ||| |||||| || |||| |||||||| ||| || || ||||| | Sbjct 205963 GAAGGATCA--TTGCAAACTAGAAAATGGCAGGATCAAAATGGTTTAGAACGCTACACTA 205906 Query 38492 TAGGCATTGTGGTTCAGGGTTACAATGGTGTAATGCAAATGCTTGGTAG 38540 || ||||| | | | || | ||| |||||||||||| ||||| Sbjct 205905 CAGAAATTGTTG-TAAATATTGGA--GGTACAATGCAAATGCTAGGTAG 205860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132897028427072