Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq82 158 1e-33 >seq82 Length=657493 Score = 158 bits (174), Expect = 1e-33 Identities = 278/404 (69%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 141927 TTTTCATCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 141986 ||||| || | || | |||||||| | |||||||| | || | ||| || ||||| Sbjct 460866 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 460925 Query 141987 ATCGGATAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATTTTACT 142046 || |||||| | || || || || || | || || ||||||||||| |||||||| Sbjct 460926 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 460985 Query 142047 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCTGTATGTCGAACTTCACCCATACCG 142106 ||| |||| |||||||| | || |||||| ||| ||||| |||| || | | Sbjct 460986 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 461045 Query 142107 ATCTTAGAACCTTCTGCACGAAGCATGCCAACGTTGATACCGATACCAGCTCGTTTAGAA 142166 || | |||| ||||||||| | ||| | || ||||| || || ||||||| |||| Sbjct 461046 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 461105 Query 142167 ATATATTCGATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142226 | ||||| | ||| || | ||| ||||||||| | || |||| | |||| Sbjct 461106 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 461165 Query 142227 ATAACTACAC---AACTAGAGAACTGGCGAGTCGGAGTACGAGCACCTGCCATAATTGGA 142283 || | |||| | ||| || || ||||| ||||| | | | || | ||||||||| Sbjct 461166 ATTAAAACACATGAGCTA---AATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGT 461222 Query 142284 GTAGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACG 142327 || || || |||| || ||| |||| ||||| ||||||||| Sbjct 461223 GTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACG 461266 Score = 100 bits (110), Expect = 3e-16 Identities = 259/389 (67%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 140162 AATCTCATCAAATACCTTCGATGGATCAGTATAAAGATTTCGCATAATATGAGTATATGA 140221 ||| |||||||||| |||||| | || || ||||| |||||||||||||| || Sbjct 459081 AATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGAGTATAAGA 459140 Query 140222 ACGAGAGTGAATAGTTTCACTGAATGTCCATGTAGCAACCCATGTATCTAATGAAGGGTC 140281 ||| |||||||||||||| || | |||||| ||| ||| || |||||| || Sbjct 459141 ACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAATTCCGGAAT 459200 Query 140282 AGAAATCAGTGCCATAAGTACCGCAGATGGGGC-CCTGCCTTGGATAGAATCTAATAATG 140340 |||||| | || | || | | | | || | || ||||| ||||| |||||||||| Sbjct 459201 AGAAATAATTGGTAGAA-AAGCAATGTTAGGACTTCTTCCTTGAATAGAGTCTAATAATG 459259 Query 140341 ATTGATACTTAAGGTTGTTTGTAAAGATGTCCTGTTGGAACTGAGGAAGCTTATTGAACT 140400 |||||| || | || | ||| || | | || | ||| | || ||||| Sbjct 459260 TTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGGTAAATT-TTGAAAA 459318 Query 140401 GCGCAGAGTCCAACATCAAG-----TTTACCTCTTCAGGGCGCCAGAAAAATGACAATTG 140455 | | || | | || || | || |||||||| | ||| ||||| || | ||| Sbjct 459319 TC---TATTCTATC-TCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAAAGAGAGTTG 459374 Query 140456 CTTTTCGGTCAAATCTTCAAAAACTTTATGGCGTTGAATATCATAACGCGCAATACCAAG 140515 ||||| | || | |||||||| |||| ||| |||||| || |||||| | Sbjct 459375 TTTTTCAATTAATTTTTCAAAAATATTATATTTTTGCTGATCATATCGGGCAATATTGAC 459434 Query 140516 ACCTGAACCAAAAAACATAGGTTCTTTTA 140544 | | ||||||||||||||||| |||| Sbjct 459435 AGGTTGTCCAAAAAACATAGGTTCCTTTA 459463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535280393018880