Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq82 161 1e-34 >seq82 Length=657493 Score = 161 bits (178), Expect = 1e-34 Identities = 286/417 (69%), Gaps = 0/417 (0%) Strand=Plus/Minus Query 41174 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41233 || ||||| || || |||||| |||| || | |||||||| || || ||| | || Sbjct 461233 TCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGT 461174 Query 41234 GTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTG 41293 || | ||||||| | |||| || | |||| | || ||| || | | || || Sbjct 461173 GTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTA 461114 Query 41294 AAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGT 41353 || ||| |||| ||||| || || || ||| ||||||||||| | ||||| ||| | ||| Sbjct 461113 AAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGT 461054 Query 41354 TCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATT 41413 | || | ||| |||||| | ||||| || || || || | |||||| || Sbjct 461053 AGTCCTATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTTTATAAACATTTT 460994 Query 41414 CAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTAT 41473 || | || || ||||||||||| ||||| || ||| | ||||| || ||||| | | | Sbjct 460993 CAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTT 460934 Query 41474 TATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTT 41533 ||||| || |||||||| ||| |||||| | | ||| | ||||| || | || || Sbjct 460933 TATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATT 460874 Query 41534 GAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTAT 41590 || | || | | |||||| | ||||||| || || |||| | ||||||||| Sbjct 460873 GAAGAAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAATTGATGTAT 460817 Score = 104 bits (114), Expect = 3e-17 Identities = 191/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 42927 TTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTAT 42986 ||||||||||||| | |||||| || | || |||| || | |||||||||||| | Sbjct 459427 TTGCCCGATATGATCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCT 459368 Query 42987 CATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAAA 43046 | || || ||| |||| |||||| | ||||| || || | || | | | ||| Sbjct 459367 CTTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAAAATT 459308 Query 43047 TGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGATA 43106 | || ||||| || ||| |||||| | ||| | |||||||||| | ||||| Sbjct 459307 TACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACT 459248 Query 43107 CCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAATGG 43166 | ||||| ||| | | |||||| | || ||||| || ||| ||| | | | | Sbjct 459247 CTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAG 459188 Query 43167 AAACGTGGATCGAAACATGGGCTTTCAGTGAAACAATTCA 43206 |||| ||||| ||||||||| |||| ||||| ||||| Sbjct 459187 AAACCTGGATTGAAACATGGTCTTTTTCGGAAACTATTCA 459148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570009395669760