Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq82 161 1e-34 >seq82 Length=657493 Score = 161 bits (178), Expect = 1e-34 Identities = 279/404 (69%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 142406 TTTTCATCCACGCCTTTGTTATTTTTCAGAACCAACAGGTTCTCTACTTCTAAGTGCCAC 142465 ||||| || | ||| | |||||||| | ||| || | | || | ||| || ||||| Sbjct 460866 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 460925 Query 142466 ATCGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACT 142525 || |||||| | || || || ||||| | || || ||||||||||| |||||||| Sbjct 460926 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 460985 Query 142526 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCA 142585 ||| |||| |||||||| | || |||||| ||| ||||| |||| || | | | Sbjct 460986 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 461045 Query 142586 ATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAA 142645 || | |||| ||||||||| | ||| | || ||||| || || ||||||| |||| Sbjct 461046 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 461105 Query 142646 ATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142705 | ||||| | ||| || | ||| ||||||||| | || |||| | |||| Sbjct 461106 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 461165 Query 142706 ATAACTACAC---AACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGG 142762 || | |||| | ||| || || ||||| ||||| | | | || | ||||||||| Sbjct 461166 ATTAAAACACATGAGCTA---AATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGT 461222 Query 142763 GTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACG 142806 || || || |||| || ||| |||| ||||| ||||||||| Sbjct 461223 GTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACG 461266 Score = 86.0 bits (94), Expect = 7e-12 Identities = 220/329 (67%), Gaps = 12/329 (4%) Strand=Plus/Plus Query 140645 AATCTCATCAAATACCTTCGATGGATCAGTATAAAGATTTCGCATGATATGAGTATATGA 140704 ||| |||||||||| |||||| | || || ||||| || ||||||||||| || Sbjct 459081 AATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGAGTATAAGA 459140 Query 140705 ACGAGAGTGAATGGTTTCACTGAATGTCCATGTAGCAACCCATGTATCTAATGAAGGGTC 140764 ||| |||||||| ||||| || | |||||| ||| ||| || |||||| || Sbjct 459141 ACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAATTCCGGAAT 459200 Query 140765 AGAAATCAGTGCCATAAGTACCGCAGATGGGGC-CCTGCCTTGGATAGAATCTAATAATG 140823 |||||| | || | || | | | | || | || ||||| ||||| |||||||||| Sbjct 459201 AGAAATAATTGGTAGAA-AAGCAATGTTAGGACTTCTTCCTTGAATAGAGTCTAATAATG 459259 Query 140824 ATTGATACTTAAGATTGTTTGTAAAGATATCCTGTTGAAACTGAGGAAGCTTATTGAACT 140883 |||||| || | ||| | ||| |||| | || | | ||| | || ||||| Sbjct 459260 TTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGGTAAATT-TTGAAAA 459318 Query 140884 GCGCAGAGTCCAACATCAAG-----TTTACCTCTTCCGGGCGCCaaaaaaaCGACAATTG 140938 | | || | | || || | || ||||| || | ||||||||| || | ||| Sbjct 459319 TC---TATTCTATC-TCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAAAGAGAGTTG 459374 Query 140939 CTTTTCAATAAGCTCTTCAAAAACTTTAT 140967 |||||||| | | |||||||| |||| Sbjct 459375 TTTTTCAATTAATTTTTCAAAAATATTAT 459403 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 141428 GGAACTACTTGACGGAAATTACCTTCTTTAGATTCTTTAATACTTACTGGGCCACGAGGT 141487 |||||||||||||| || | || ||||| ||| |||||||||| | || | ||| Sbjct 459879 GGAACTACTTGACGTAATATTCCATCTTTTGATACTTTAATACTAATAAAACCTCTTGGT 459938 Query 141488 GGTTCAATACCATTTGTGCTATTTGAGACCTGGCTGCTTGATTCGCATGGCATGAGTGCA 141547 |||||||| ||||| || ||| || | || | || ||| | ||||| |||||| Sbjct 459939 GGTTCAATTCCATTAGTTGCATTAGATATTTGAGAGGATGTTTCTGAAGGCATAAGTGCA 459998 Query 141548 GACAACGTTGAGTTACGAATTCCATGTTCTTTGAGTTCAG 141587 || || |||||||| | | |||||||| ||| | || || Sbjct 459999 GATAATGTTGAGTTTCTTAATCCATGTTTTTTAATTTTAG 460038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540861097029120