Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq82 127 5e-24 >seq82 Length=657493 Score = 127 bits (140), Expect = 5e-24 Identities = 187/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 279293 TGGAACGTTGGTGAGCTTGATGATATGACGTTACCACCTTGTCATAGCTTTGTGCAATTT 279352 ||||| ||||| || || | | |||| |||||||||||||||| || | || ||| Sbjct 104959 TGGAATGTTGGAGAAATTAACAAAATGAAATTACCACCTTGTCATATATTATTTCAGTTT 105018 Query 279353 TGTGTAGTGCAAGGAAAACTAAGCTGTATTCTGCATCAACGCTCCGCTGATCTATTTTTA 279412 | ||| | | |||| |||| ||| || | ||||| || |||| ||||| | Sbjct 105019 TATGTTTTTAACAAAAAATTAAGTTGTCAACTTTACCAACGTTCTTGTGATGTATTTCTT 105078 Query 279413 GGAGTTCCATTTAATATCAGTAGTTACTCACTACTAACTCATATGATTGCACAAATTACT 279472 ||| | || |||||||| |||||| || |||| | ||||||||| |||||| | Sbjct 105079 GGATTACCTTTTAATATAGCTAGTTATGCAATACTTATTCATATGATAGCACAACAATGT 105138 Query 279473 GGTTTAGATGTTGGTGAATTTATTTGGAATGGTGGTGATTGTCACATTTATAAAAACCAC 279532 | |||||| ||||| |||||| | |||| || |||||| || | ||||| || ||| Sbjct 105139 GATTTAGAAGTTGGAGAATTTTTATGGACAGGAGGTGATGTCCATCTATATAATAATCAC 105198 Query 279533 GTTGAACAAGTAAAAGAACAACTAC 279557 ||||| || |||| ||||| ||| Sbjct 105199 ATTGAATTAGCAAAAAAACAAGTAC 105223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115151539531744