Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_025829.1 Length=164999 Score E Sequences producing significant alignments: (Bits) Value seq82 199 4e-46 >seq82 Length=657493 Score = 199 bits (220), Expect = 4e-46 Identities = 313/444 (70%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 143814 ATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATT 143873 ||| | ||| || ||||||| | ||||| | | |||||||| | || | ||||| Sbjct 460829 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 460888 Query 143874 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 143933 ||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || || Sbjct 460889 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 460948 Query 143934 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 143993 || || | || ||| || || ||||| ||||| || ||| | ||||||||||| |||| Sbjct 460949 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 461008 Query 143994 AGGAATAACACCAGTATGACGCACTTCACCCATTCCAATCTTAGAACCTTCGGCACGAAT 144053 ||||||| |||||||||| |||| || ||| ||| | |||| | |||||||| Sbjct 461009 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 461068 Query 144054 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGA---AGC 144110 | ||| | |||||||||||||| || |||| || | ||||| ||||| || || Sbjct 461069 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 461128 Query 144111 AGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAACGCATGAACT 144167 || ||| ||| ||||| | || || | ||||| | ||||| | ||| ||||| || Sbjct 461129 AGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAACACATGAGCT 461182 Query 144168 AAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGGGTTGGCAGTGAAATCTGTCG 144227 ||| || ||||| ||||| | |||| |||||| || || || | ||||| | Sbjct 461183 AAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAA 461242 Query 144228 AGTAGATACTGCTTCATAAAAACG 144251 ||| || | || | ||||||||| Sbjct 461243 AGTTGAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527859720656640