Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq1048 159 8e-35 >seq1048 Length=3623 Score = 159 bits (176), Expect = 8e-35 Identities = 211/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 26466 GTGTTGTAGTCTCGTCGCCAGCCAGGAGCATAAGCATCACCATGATTAATATAAGTGAAT 26525 |||||||| |||| |||||| |||| ||||| || ||| ||||||||||| ||||| Sbjct 1516 GTGTTGTAATCTCTGCGCCAGGCAGGGGCATACGCGCTACCGTGATTAATATAGGTGAAC 1575 Query 26526 TGAGCGTTAGTAATTCCGCCACCGCTGGACGTGCTCGGCGTGGTAACGCGTATGGTCATT 26585 ||||| | ||| || |||||| | | ||| | ||||| ||||| || ||||||||| Sbjct 1576 TGAGCACAGGCAATCCCACCACCGGTAGTCGTTGTAGGCGTAGTAACTCGGATGGTCATT 1635 Query 26586 GCGCCGCGAGTGCCAATAACTTCCACCACAGCACCTGCAAGACAAATATTTCCGCAACCT 26645 ||||| || || | ||| || | || ||||| |||||||| ||||| ||| |||| Sbjct 1636 GCGCCTTCGGTACCTAAAACCTCGATAACCGCACCAGCAAGACAGATATTACCGACACCT 1695 Query 26646 GTATCTGTAATGACCTTATTATTTGCATAAGCCCATGAGCCTTTGCACATCCAGTAAGGA 26705 ||||| || || | ||||| | ||||| | ||| || || || ||||||||| || Sbjct 1696 GTATCAGTGATAATTTTATTGTCGGCATATGACCAGGAACCCTTCATCATCCAGTACGGC 1755 Query 26706 TGGTTAAATGCTCCCTGACTCTCCAGCCACGAAATAAATTGCGCGGTTGTCCA 26758 | || || || | || |||||| | ||||||| ||||| ||||| Sbjct 1756 ACTTCGAAAGCACCACGCTCCTTCAGCCATGCGATAAATTCAGCGGTAGTCCA 1808 Score = 111 bits (122), Expect = 4e-20 Identities = 184/266 (69%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 24359 GCATGGGTGTACGCAAACCGCCTTGCAATTAACAGCAGCACAGGCATGTGGATTCATATG 24418 || ||| | ||||| ||||| || | || |||||||| | || ||||| ||||| Sbjct 905 GCGTGGATTTACGCCAACCGTTTTTCCATCAACAGCAGTTCTGGATCATGGATCGATATG 846 Query 24419 CGTGACCAGAATGTTATTTTTGGACGTAATGCGGTATCCACTGATGGTGCTCAGGCTTTG 24478 ||| ||||||| || || || || | || || ||| ||| ||| || || ||| Sbjct 845 CGTAACCAGAACGTCATCTTCGGGAGGAACGCTGTAAGCACAAGCTCTGCACAAGCATTG 786 Query 24479 CTCCGTCAGGACCATGCCGACCGCAAATTTATGATTGGCGGTCTGGGAAATAAGCAATTT 24538 | | || |||||||| ||||||||||| | ||||||| ||||||| | || ||| Sbjct 785 TTGAGACAAGACCATGCGGACCGCAAATTCTTCGTTGGCGGCTTGGGAAACAGTCAGTTT 726 Query 24539 GGCATCTACATGATTAATAACTCAAGGACAGCCAATGGCACCGATGGTCAGGCGTACATG 24598 || | |||||||| || |||||| | || | || ||||| |||| | || ||| | Sbjct 725 GGTTTTTACATGATCAACAACTCACGTACCGAAAACGGCACGGATGCGAACGCATACCTC 666 Query 24599 GACAATAACGGTAACTGGCTTTGCGG 24624 | ||| | |||| ||| |||| || Sbjct 665 CAGAATGATGGTACTTGGGTTTGTGG 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114481329344512