Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq16 129 7e-25 seq3 107 2e-18 >seq16 Length=39632211 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||| |||||| | | || ||||| || ||||| | | || ||||| || || Sbjct 38024969 AGAGGCCTCACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGACAAAATCACCA 38025028 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || ||| | |||||| || | |||| | || || || |||||| || ||||| Sbjct 38025029 GGGACAAGTTCACACACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTA 38025088 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || |||||||| ||| |||| | ||| |||| |||||||||||||||||| Sbjct 38025089 AACGGCACACCAAGGCCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCT 38025148 Query 147100 TCGGCCACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || ||||| || ||||| ||| | ||||||||||| || |||||||| Sbjct 38025149 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGAAGCGCCAT 38025195 >seq3 Length=51870232 Score = 107 bits (118), Expect = 2e-18 Identities = 138/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 |||||| || | |||| | || || || |||||| || ||||| || || || | || Sbjct 35473420 CACGTGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACATCAAG 35473361 Query 147054 GCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAA 147113 |||||| ||| | || | ||| |||| || ||| || |||||||| || ||||| || || Sbjct 35473360 GCCCATATCCGCTGAACGCTGATACATCTTGCATGAAAGCTCCCCTTCCGCCACATAGAA 35473301 Query 147114 CTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT-GGCGGGCAGGTCCGCGGGGTTCCAG 147171 ||| ||| | ||||||||||| ||||||||||| || | ||||| | |||||||| Sbjct 35473300 CTGTGCAAAC-ATGTGGCACGGAGGCAGCGCCATCAGCTTG-AGGTCAGAAGGGTTCCAA 35473243 Query 147172 GCCGA 147176 || || Sbjct 35473242 GCAGA 35473238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583477964006400