Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_026583.1 Length=49577 Score E Sequences producing significant alignments: (Bits) Value seq8 127 6e-25 seq18 123 8e-24 seq9 123 8e-24 >seq8 Length=24646021 Score = 127 bits (140), Expect = 6e-25 Identities = 248/361 (69%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 10572 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCCTG 10631 ||||||||||| ||||| | ||||||||||| || || || ||||| || | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 10632 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATGCA 10690 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 10691 GCAGGCGGACACCCGCGGGGACGCGCTGACTCACCTGACGCTGCGCG-CGGTGCGCGAGG 10749 |||||| ||| | | | ||| | || | ||||| || ||| | |||||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTG-GCGACAGTGCGCGAAG 19508431 Query 10750 TGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTTGAGAACGACCCGGAACCCCGCG 10809 |||||| ||||| || | ||||||||| ||| || |||||||||| | || | Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCAGA 19508371 Query 10810 TCTTGCGGGGATGGGCTCGCGTCGCGACGGGCCGGGAGACCTGCGCCTGGTGCCTGATGC 10869 || || ||| ||||| | ||||| || || || || || ||||||||||| ||||||| Sbjct 19508370 TCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGATGC 19508311 Query 10870 TGATCAGCCGCGGACCTACGTACGTCCGGGCCGAGACCGCCGGTCTCGACCTTGATACGG 10929 |||| ||| || || |||| | ||| || | || ||||| |||| || || | Sbjct 19508310 TGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACACCG 19508251 Query 10930 A 10930 | Sbjct 19508250 A 19508250 >seq18 Length=36757632 Score = 123 bits (136), Expect = 8e-24 Identities = 403/621 (65%), Gaps = 28/621 (5%) Strand=Plus/Plus Query 43554 GGAACCGTTCGGTGATCTTCTCCTCG-GTCCAGTCGGTGAGGTCGTACGGATACGTCGGC 43612 ||||| |||||||| || | || ||||| | || |||||||| || | |||||| Sbjct 22718114 GGAACTCCTCGGTGATGG-CTTCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGC 22718172 Query 43613 TT---------GCCGGTCTTCGCCA---TGAAGTAGATCCCGCGCT--GGA-CGTCGAGG 43657 || ||| ||||| ||| |||||||| ||| || ||| | |||| Sbjct 22718173 TTCGGTGCCTTGCCCTTCTTCCCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACA 22718232 Query 43658 CCGTAGAGCTGTTTCAACGCCAGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTG 43717 |||||| | | ||| ||||||||||| ||||||| ||||| || || || | | Sbjct 22718233 CCGTAGGTCATCGCGACCGCGAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGG 22718292 Query 43718 AGTCCGGTCTTCCAGTCGACCACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATG 43777 |||||||| |||| || | | ||| || ||||||||| Sbjct 22718293 TTCCCGGTCTTGTAGTCCCGGACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATG 22718352 Query 43778 TAGCCGCGGATCTCTATCCCATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGCGTG 43837 || ||||| | | ||||| |||||||||| ||||| ||||| ||| | ||||| Sbjct 22718353 TATCCGCGAACCAGGATCCCGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTA 22718412 Query 43838 CCGTCCGGTGTGTGCCACACCTCTAAGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTG 43897 |||||||| || ||| | ||| || | || | | || ||| | | | ||| Sbjct 22718413 CCGTCCGGGGTCACCCAGATCTCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTC 22718469 Query 43898 TCCACCTGCTGGAGCCCGATACCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGC 43957 || ||||||| || |||| | || ||||||||||| | ||| |||||| Sbjct 22718470 TCGACCTGCTCCAGGCCGACGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGA 22718529 Query 43958 CCGGAGGCGAACCACCACCCCAGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGT 44015 || || ||||||| | | |||||||||||||||||| || || | ||| Sbjct 22718530 CCAGACCACGTCCACCACTCGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGT 22718587 Query 44016 CGGCGTACTCGGCC--TTGAAGATTTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGC 44073 |||||| | ||| ||| || || | | ||| || |||||||||| |||| Sbjct 22718588 TGGCGTAGT--GCCAACGGAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTA 22718645 Query 44074 GAGCTTCGATAGCATGTATTTCTCAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCA 44133 | || | ||| | | |||||| || ||||||| | |||| |||||| ||||||| Sbjct 22718646 GGACTCCCATACCTCGACCGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCA 22718705 Query 44134 GGCCGCTGGACGTTTCCACAC 44154 ||||||||| || | |||||| Sbjct 22718706 GGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 123 bits (136), Expect = 8e-24 Identities = 403/621 (65%), Gaps = 28/621 (5%) Strand=Plus/Minus Query 43554 GGAACCGTTCGGTGATCTTCTCCTCG-GTCCAGTCGGTGAGGTCGTACGGATACGTCGGC 43612 ||||| |||||||| || | || ||||| | || |||||||| || | |||||| Sbjct 16532230 GGAACTCCTCGGTGATGG-CTTCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGC 16532172 Query 43613 TT---------GCCGGTCTTCGCCA---TGAAGTAGATCCCGCGCT--GGA-CGTCGAGG 43657 || ||| ||||| ||| |||||||| ||| || ||| | |||| Sbjct 16532171 TTCGGTGCCTTGCCCTTCTTCCCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACA 16532112 Query 43658 CCGTAGAGCTGTTTCAACGCCAGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTG 43717 |||||| | | ||| ||||||||||| ||||||| ||||| || || || | | Sbjct 16532111 CCGTAGGTCATCGCGACCGCGAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGG 16532052 Query 43718 AGTCCGGTCTTCCAGTCGACCACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATG 43777 |||||||| |||| || | | ||| || ||||||||| Sbjct 16532051 TTCCCGGTCTTGTAGTCCCGGACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATG 16531992 Query 43778 TAGCCGCGGATCTCTATCCCATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGCGTG 43837 || ||||| | | ||||| |||||||||| ||||| ||||| ||| | ||||| Sbjct 16531991 TATCCGCGAACCAGGATCCCGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTA 16531932 Query 43838 CCGTCCGGTGTGTGCCACACCTCTAAGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTG 43897 |||||||| || ||| | ||| || | || | | || ||| | | | ||| Sbjct 16531931 CCGTCCGGGGTCACCCAGATCTCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTC 16531875 Query 43898 TCCACCTGCTGGAGCCCGATACCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGC 43957 || ||||||| || |||| | || ||||||||||| | ||| |||||| Sbjct 16531874 TCGACCTGCTCCAGGCCGACGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGA 16531815 Query 43958 CCGGAGGCGAACCACCACCCCAGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGT 44015 || || ||||||| | | |||||||||||||||||| || || | ||| Sbjct 16531814 CCAGACCACGTCCACCACTCGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGT 16531757 Query 44016 CGGCGTACTCGGCC--TTGAAGATTTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGC 44073 |||||| | ||| ||| || || | | ||| || |||||||||| |||| Sbjct 16531756 TGGCGTAGT--GCCAACGGAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTA 16531699 Query 44074 GAGCTTCGATAGCATGTATTTCTCAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCA 44133 | || | ||| | | |||||| || ||||||| | |||| |||||| ||||||| Sbjct 16531698 GGACTCCCATACCTCGACCGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCA 16531639 Query 44134 GGCCGCTGGACGTTTCCACAC 44154 ||||||||| || | |||||| Sbjct 16531638 GGCCGCTGGCCGCTGCCACAC 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158522209704768