Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8 114 2e-20 seq12 113 6e-20 >seq8 Length=24646021 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||| | ||| | || | |||||| |||| |||||| Sbjct 14311519 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 14311460 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| ||||||||| | || || || || || || Sbjct 14311459 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 14311400 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || |||| || | ||||| |||||||| ||||| || Sbjct 14311399 AACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCCTTCAATGTATCATAAAT 14311340 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||| || ||||| | || ||||||||| Sbjct 14311339 TCCCTCAATGCTATCGTCCTTCATGCAGATCAGGAAACAGCTA 14311297 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| | ||| || | || ||||| || ||||| |||||| | | ||| | | || Sbjct 14311192 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATG 14311133 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| || || || || ||||| | ||||| || | | || | ||| | Sbjct 14311132 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 14311073 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||||||||||| || ||| ||| || | ||| || ||||||||| | || || Sbjct 14311072 CATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 14311013 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| |||||||| |||| ||| ||| || | || ||||| || Sbjct 14311012 TGTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 14310965 >seq12 Length=46391361 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | || || | ||| | || | |||||| |||| |||||| Sbjct 30921085 TCCTCCTTGGTCAACGTAGCGAGCGGTATCATTGAAAACACGCAGCATTGGAAGAATACC 30921026 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| || || || || || Sbjct 30921025 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 30920966 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || |||| || | ||| || |||||| || |||||||| Sbjct 30920965 AACACCGATACCCCCAGCTGATTTACTTATAACAGCGCACTCTTTCAAGGTATCATATAT 30920906 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| ||||||||||| ||||| Sbjct 30920905 TCCCTCGATGCTATCATCCTTCATG 30920881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686896985168640