Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq82 172 6e-38 >seq82 Length=657493 Score = 172 bits (190), Expect = 6e-38 Identities = 303/440 (69%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 143127 TTGATTTGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 143186 || ||||| | |||| || | |||||| | || ||||| || | ||| | || || Sbjct 460830 TTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTT 460889 Query 143187 TTAAGTACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCA 143246 || | || | | | | || | ||||| |||||| |||||||| | | ||||| || Sbjct 460890 TTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCT 460949 Query 143247 CCACCACGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAA 143306 ||||| | |||||| ||||| ||||||||||| || ||| |||| || ||||| | ||| Sbjct 460950 CCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAAA 461009 Query 143307 GGAATAACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCTGCACGCAAC 143366 |||||| |||||||| |||| || |||| || |||| ||||||| | Sbjct 461010 GGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAATT 461069 Query 143367 ATCCCCGCGTTAATGCCAATACCTGCACGCTTACTGATATACT---CAATAATGCTTGCA 143423 | || || ||||| ||||| ||||| || | | | ||| | ||||| || | | Sbjct 461070 TTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGTA 461129 Query 143424 CTGGCTTTGTTAATTGACTTAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAAC 143483 | || |||||| || | || ||| || |||||| | |||||| |||||||| Sbjct 461130 GTAGC---GTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAAT 461186 Query 143484 TGACGAGTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTTGACGAGTA 143543 || ||||| || || | | | || | ||||||||| || || |||||||||| ||| Sbjct 461187 TGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTT 461246 Query 143544 GATACGGCGTCATAAAAACG 143563 || | ||| | ||||||||| Sbjct 461247 GAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544953826632960