Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq82 217 2e-51 >seq82 Length=657493 Score = 217 bits (240), Expect = 2e-51 Identities = 319/450 (71%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 139531 CATCAAATCATTCAGCTGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCC 139590 |||||| | ||| | || || ||||||| | ||||| | | |||||||| | ||| Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 139591 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 139650 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 139651 AGTAGCAGCGCCGCCACGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATG 139710 ||| || || || || | || ||| || || ||||| ||||| |||||| | |||||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 139711 TTTCCAAAAAGGAATAACACCAGTATGACGCACTTCACCTGTGCCAATCTTAGAACCTTC 139770 ||| ||||||||||| |||||||||| |||| || | | ||| | |||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 139771 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAAT 139830 |||||||| | ||| | |||||||||||||| || |||| || | ||||| ||||| Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 139831 TGA---AGCAGAAGCCTTATTGATAGACTTCAGCGAATCACCTGCCTCAATAACAACACA 139887 || || || ||| ||| ||||| | || |||| | ||||| | |||||| Sbjct 461120 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACATTCAATTAAAACACA 461176 Query 139888 TGAACTAAACTGCCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 139947 ||| ||||| || ||||| ||||| | | |||| |||||| || || || || ||||| Sbjct 461177 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAAT 461236 Query 139948 CTGTCGAGTAGATACTGCTTCATAAAAACG 139977 | ||| || | || | ||||||||| Sbjct 461237 TTTGAAAGTTGAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534189211787520