Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027352.1 Length=159492 Score E Sequences producing significant alignments: (Bits) Value seq341 232 7e-56 >seq341 Length=107858 Score = 232 bits (256), Expect = 7e-56 Identities = 364/512 (71%), Gaps = 7/512 (1%) Strand=Plus/Plus Query 7600 TTTTTGATTATATAACAAAGGAGAGGAATTAATA-TGGGAACATATAACGTACACGGTGG 7658 ||||| || | || | |||||||| | | |||| ||| | |||| |||| ||||| Sbjct 46786 TTTTTTATCACATTA-AAAGGAGATGT-TGAATAATGGCTAAGTATAGTTTACATGGTGG 46843 Query 7659 TCACAAC-AGTATTGTGCAAGGAGCTAACTACGGAAACCGAAAAGAGCACGTTATGGATC 7717 ||| | ||| |||| ||||||||||||| ||||| |||||||| || ||||||||| Sbjct 46844 TCATACTGAGT-TTGTACAAGGAGCTAACTGGGGAAATCGAAAAGAACATATTATGGATC 46902 Query 7718 GTCAAGTGAAGGACGCTCTAATCAG-TAAGCTACGTAGTCTTGGTCACACAGTATACGAC 7776 ||| || ||||| || | ||| |||| || | | | ||||| || || || || Sbjct 46903 GTCTTGTTAAGGATGCGGTTG-CAGCTAAGTTAAGAGCTTTAGGTCATACGGTTTATGAT 46961 Query 7777 TGCACAGATGAGACAGGTTCTACACAGTCTGCTAACTTACGTAACATCGTAGCTAAATGT 7836 ||||||||| ||| ||||| | |||||| || ||||| ||||||| Sbjct 46962 GACACAGATGAAGTAGGAAGAACACAAGCACAAAACTTATCAAATATCGTTCGTAAATGT 47021 Query 7837 AACGCTCATAACGTAGACTTAGACATCTCATTACACTTAAACGCATTCAACGGATCGGCT 7896 || ||||| | || || |||| |||||||| || || || |||| | || ||| Sbjct 47022 AATTCTCATGATGTTGATTTAGTTATCTCATTCCATTTGAATGCATATGATGGGAAAGCT 47081 Query 7897 AATGGTGTTGAGGTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTGTCTAAGCAA 7956 ||||| || || ||||| || || ||||||||||| ||||||| ||||| || |||| Sbjct 47082 AATGGCGTGGAAGTTTGTTATTATGACCAACAAGCATTAGCTGCAAAAGTATCAGCGCAA 47141 Query 7957 TTGTCTGACGACATCGGATGGTCTAACCGTGGAGCTAAACCTCGTACAGACCTTTACGTT 8016 | || | || ||||| ||||| || |||||||| ||| ||||| || || || || Sbjct 47142 CTTTCAAAAGATATCGGTTGGTCAAATCGTGGAGCGAAAAAGCGTACTGATCTCTATGTG 47201 Query 8017 CTAAACAACACAAGAGCACCTGCTATCTTAATCGAATTAGGATTCATCGACAACGATAGC 8076 || | | || | |||||| || |||||||||||| | ||||||||||| || ||| Sbjct 47202 CTGACTGAAACCAAAGCACCAGCAATCTTAATCGAACTTGGATTCATCGATAATGATGCG 47261 Query 8077 GACATGGCTAAGTGGAACGTAGATAAAATCGC 8108 || ||| | |||||| | |||||||| || || Sbjct 47262 GATATGTCGAAGTGGCATGTAGATAATATTGC 47293 Score = 232 bits (256), Expect = 7e-56 Identities = 364/512 (71%), Gaps = 7/512 (1%) Strand=Plus/Plus Query 7600 TTTTTGATTATATAACAAAGGAGAGGAATTAATA-TGGGAACATATAACGTACACGGTGG 7658 ||||| || | || | |||||||| | | |||| ||| | |||| |||| ||||| Sbjct 97198 TTTTTTATCACATTA-AAAGGAGATGT-TGAATAATGGCTAAGTATAGTTTACATGGTGG 97255 Query 7659 TCACAAC-AGTATTGTGCAAGGAGCTAACTACGGAAACCGAAAAGAGCACGTTATGGATC 7717 ||| | ||| |||| ||||||||||||| ||||| |||||||| || ||||||||| Sbjct 97256 TCATACTGAGT-TTGTACAAGGAGCTAACTGGGGAAATCGAAAAGAACATATTATGGATC 97314 Query 7718 GTCAAGTGAAGGACGCTCTAATCAG-TAAGCTACGTAGTCTTGGTCACACAGTATACGAC 7776 ||| || ||||| || | ||| |||| || | | | ||||| || || || || Sbjct 97315 GTCTTGTTAAGGATGCGGTTG-CAGCTAAGTTAAGAGCTTTAGGTCATACGGTTTATGAT 97373 Query 7777 TGCACAGATGAGACAGGTTCTACACAGTCTGCTAACTTACGTAACATCGTAGCTAAATGT 7836 ||||||||| ||| ||||| | |||||| || ||||| ||||||| Sbjct 97374 GACACAGATGAAGTAGGAAGAACACAAGCACAAAACTTATCAAATATCGTTCGTAAATGT 97433 Query 7837 AACGCTCATAACGTAGACTTAGACATCTCATTACACTTAAACGCATTCAACGGATCGGCT 7896 || ||||| | || || |||| |||||||| || || || |||| | || ||| Sbjct 97434 AATTCTCATGATGTTGATTTAGTTATCTCATTCCATTTGAATGCATATGATGGGAAAGCT 97493 Query 7897 AATGGTGTTGAGGTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTGTCTAAGCAA 7956 ||||| || || ||||| || || ||||||||||| ||||||| ||||| || |||| Sbjct 97494 AATGGCGTGGAAGTTTGTTATTATGACCAACAAGCATTAGCTGCAAAAGTATCAGCGCAA 97553 Query 7957 TTGTCTGACGACATCGGATGGTCTAACCGTGGAGCTAAACCTCGTACAGACCTTTACGTT 8016 | || | || ||||| ||||| || |||||||| ||| ||||| || || || || Sbjct 97554 CTTTCAAAAGATATCGGTTGGTCAAATCGTGGAGCGAAAAAGCGTACTGATCTCTATGTG 97613 Query 8017 CTAAACAACACAAGAGCACCTGCTATCTTAATCGAATTAGGATTCATCGACAACGATAGC 8076 || | | || | |||||| || |||||||||||| | ||||||||||| || ||| Sbjct 97614 CTGACTGAAACCAAAGCACCAGCAATCTTAATCGAACTTGGATTCATCGATAATGATGCG 97673 Query 8077 GACATGGCTAAGTGGAACGTAGATAAAATCGC 8108 || ||| | |||||| | |||||||| || || Sbjct 97674 GATATGTCGAAGTGGCATGTAGATAATATTGC 97705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510237623761920