Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq82 118 2e-21 >seq82 Length=657493 Score = 118 bits (130), Expect = 2e-21 Identities = 205/296 (69%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 6078 TAATTCAGGTAATTCACGAGGTTTTCTCTGTAGTTGTTCTTTTACTTGTTCAACGTGGTT 6137 ||||| ||||| || ||| ||| ||| ||||| |||| || ||||| ||| || Sbjct 105252 TAATTTAGGTAGTTTTTTAGGAGATCTTAGTACTTGTTTTTTTGCTAATTCAATGTGATT 105193 Query 6138 TTTATAAATGTGGCAATCACCACCATTCCAAATAAATTCACCAACATCTAAACCCGTAAT 6197 ||||| | ||| |||||| || |||| | |||||| ||||| |||||| | Sbjct 105192 ATTATATAGATGGACATCACCTCCTGTCCATAAAAATTCTCCAACTTCTAAATCACATTG 105133 Query 6198 TTGTGCAATCATATGAGTTAGTAGTGAATAACTACTGATATTAAATGGAACTCCCAAAAA 6257 |||||| ||||||||| | |||| || ||||||| |||||||| || | ||| | ||| Sbjct 105132 TTGTGCTATCATATGAATAAGTATTGCATAACTAGCTATATTAAAAGGTAATCCAAGAAA 105073 Query 6258 TAGATCAGCGGATCTTTGATGTAGAATGCAGCTTAGTTTCCCTTGT--ACTACACAAAAT 6315 || |||| || | ||| | || || |||| ||| |||| | ||| |||| Sbjct 105072 TACATCACAAGAACGTTGGTAAAGTTGACAACTTAATTTT--TTGTTAAAAACATAAAAC 105015 Query 6316 TGTACAAAGCTATGACAAGGTGGCAACGTCATATCATCAAGCTCACCAACGTTCCA 6371 || | || ||||||||||||| || |||| | | || || ||||| ||||| Sbjct 105014 TGAAATAATATATGACAAGGTGGTAATTTCATTTTGTTAATTTCTCCAACATTCCA 104959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113810763170048