Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027382.1 Length=37146 Score E Sequences producing significant alignments: (Bits) Value seq1048 154 3e-33 >seq1048 Length=3623 Score = 154 bits (170), Expect = 3e-33 Identities = 210/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 32530 TGGACAACTGCGCAATTTATTTCGTGGCTGGAGAGTCAGGGGGCATTTAACCATCCTTAC 32589 ||||| || || ||||||| | |||||| || | || || || | || ||| Sbjct 1808 TGGACTACCGCTGAATTTATCGCATGGCTGAAGGAGCGTGGTGCTTTCGAAGTGCCGTAC 1749 Query 32590 TGGATGTGCAAAGGCTCATGGGCTTATGCAAATAATAAGGTCATTACAGATACAGGTTGC 32649 |||||| || || || ||| | ||||| | ||||| | || || ||||||||| | Sbjct 1748 TGGATGATGAAGGGTTCCTGGTCATATGCCGACAATAAAATTATCACTGATACAGGTGTC 1689 Query 32650 GGAAATATTTGTCTTGCAGGTGCTGTGGTGGAAGTTATTGGCACTCGCGGCGCAATGACC 32709 || ||||| |||||||| ||||| || | || ||| | || || |||||||||||| Sbjct 1688 GGTAATATCTGTCTTGCTGGTGCGGTTATCGAGGTTTTAGGTACCGAAGGCGCAATGACC 1629 Query 32710 ATACGTGTTACTACACCGAGTACGTCCAGCGGTGGCGGAATTACTAACGCTCAATTCACT 32769 || || |||||||| || | ||| | | |||||| || ||| | ||||| ||||| Sbjct 1628 ATCCGAGTTACTACGCCTACAACGACTACCGGTGGTGGGATTGCCTGTGCTCAGTTCACC 1569 Query 32770 TATATTAATCATGGCAATGCTTATGCTCCTGGCTGGCGACGAGACTACAACAC 32822 ||||||||||| || | || ||||| |||| |||||| |||| |||||||| Sbjct 1568 TATATTAATCACGGTAGCGCGTATGCCCCTGCCTGGCGCAGAGATTACAACAC 1516 Score = 116 bits (128), Expect = 9e-22 Identities = 178/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 34683 CCACAAAGCCAGTTACCGTTATTATCCATGTACGCCTGACCATCGGTGCCATTGGCTGTC 34742 ||||||| ||| |||| | ||| | | ||| || | |||| ||||| || | || Sbjct 640 CCACAAACCCAAGTACCATCATTCTGGAGGTATGCGTTCGCATCCGTGCCGTTTTCGGTA 699 Query 34743 CTTGAGTTATTAATCATGTAGATGCCAAATTGCTTATTTCCCAGACCGCCAATCATAAAT 34802 | |||||| || |||||||| | ||||| || | ||||||| ||||||| | ||| Sbjct 700 CGTGAGTTGTTGATCATGTAAAAACCAAACTGACTGTTTCCCAAGCCGCCAACGAAGAAT 759 Query 34803 TTGCGGTCGGCATGGTCCTGACGGAGCAAAGCCTGAGCACCATCAGTGGATACCGCATTA 34862 |||||||| |||||||| || | | ||| || || ||| ||| ||| || || Sbjct 760 TTGCGGTCCGCATGGTCTTGTCTCAACAATGCTTGTGCAGAGCTTGTGCTTACAGCGTTC 819 Query 34863 CGTCCCAAAATAACATTCTGGTCACGCATATGAATCCACATGCCGGTACTACTGTTAATT 34922 | || || || || ||||||| |||||||| ||||| || | ||| ||||| || Sbjct 820 CTCCCGAAGATGACGTTCTGGTTACGCATATCGATCCATGATCCAGAACTGCTGTTGATG 879 Query 34923 GCAAAACGGTTTGC 34936 | ||||||||| || Sbjct 880 GAAAAACGGTTGGC 893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118743659696896