Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 seq114 89.7 4e-13 seq2 89.7 4e-13 >seq1 Length=46747018 Score = 105 bits (116), Expect = 5e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 ||||| || ||| ||| || ||||| || | ||| | | |||||||| | || || Sbjct 3084137 CGACGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGCTGATGGCACTTCCTCCA 3084196 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| ||||||||||||| |||||| || || ||||||||| ||||||| Sbjct 3084197 TGCCACATGTTTGCTCAGTTTTACGTTGCCAATGGAGAGCTTTCATGTCAAATGTATCAG 3084256 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 | |||| ||| ||||| || || || ||||||||||| || Sbjct 3084257 CGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGC 3084297 >seq114 Length=481428 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| || || |||||| ||| || ||||| || | ||| | | |||||| Sbjct 455254 ATCCTGATGATCGCCGGATAATAATGTCAGCTTGGAATCCTTCTGACCTTAAGCTGATGG 455313 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || ||||| || |||| |||||||||||| || || || || || |||| Sbjct 455314 CACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCGTGTC 455373 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 455374 AAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGC 455425 >seq2 Length=31488241 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| || || |||||| ||| || ||||| || | ||| | | |||||| Sbjct 13039976 ATCCTGATGATCGCCGGATAATAATGTCAGCTTGGAATCCTTCTGACCTTAAGCTGATGG 13040035 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || ||||| || |||| |||||||||||| || || || || || |||| Sbjct 13040036 CACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCGTGTC 13040095 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 13040096 AAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGC 13040147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449334662880