Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 1e-14 >seq2 Length=31488241 Score = 96.9 bits (106), Expect = 1e-14 Identities = 318/480 (66%), Gaps = 26/480 (5%) Strand=Plus/Minus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 || ||| | ||| ||||| | || | |||||||| || | |||||| |||||| Sbjct 7377426 GAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTC 7377367 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 |||||||| | | || ||| | ||| || || | ||||||| || |||| Sbjct 7377366 GAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTCT---CCGAGGCGCGTGCCTTC 7377310 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| |||||| ||| || ||||| || ||| | ||| | ||||| | ||| | || Sbjct 7377309 TACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGCCTCTTGCT--AG 7377252 Query 443583 ACAC-TAATTCC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCG---TTCATGACCA 443637 | || || || | || || | | | || || |||||| || || || | ||||| Sbjct 7377251 ATACGTACATCAAGGAC-AACAAGGAGAG-GGACCATCTCTTCCGCGCGATTGA-GACCA 7377195 Query 443638 CGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCA 443697 || || || | | ||| | | ||||| ||||| |||| || ||||| Sbjct 7377194 TCCCTTGCGTCGCGAAGAAGGCCCAATGGGCTTTGAAGTGGATCGATGGA-----TCTCA 7377140 Query 443698 GC--TTCGTCGAGCGACTAGTCGCTTTTGCTGTG-GTCGAAGGACTGTTGTTTAGCGGCA 443754 | |||| |||| | | || || || || ||| || ||||| | || || ||| | Sbjct 7377139 GACTTTCGCCGAGAGGATCGTGGCCTTCGC-GTGCGTGGAAGGGATCTTCTTCTCCGGAA 7377081 Query 443755 GCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGT 443814 |||| || |||||||||||| | || ||||| || || |||| || || ||||| Sbjct 7377080 GCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCC 7377022 Query 443815 AACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 ||||| |||||| |||||||| || | || ||||||||||| || || |||| ||| Sbjct 7377021 AACGAGCTGATCTCGCGGGACGAAGGCCTTCACTGCGACTTCGCGTGCCTGATCTATACC 7376962 Score = 96.9 bits (106), Expect = 1e-14 Identities = 318/480 (66%), Gaps = 26/480 (5%) Strand=Plus/Plus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 || ||| | ||| ||||| | || | |||||||| || | |||||| |||||| Sbjct 27066010 GAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTC 27066069 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 |||||||| | | || ||| | ||| || || | ||||||| || |||| Sbjct 27066070 GAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTCT---CCGAGGCGCGTGCCTTC 27066126 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| |||||| ||| || ||||| || ||| | ||| | ||||| | ||| | || Sbjct 27066127 TACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGCCTCTTGCT--AG 27066184 Query 443583 ACAC-TAATTCC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCG---TTCATGACCA 443637 | || || || | || || | | | || || |||||| || || || | ||||| Sbjct 27066185 ATACGTACATCAAGGAC-AACAAGGAGAG-GGACCATCTCTTCCGCGCGATTGA-GACCA 27066241 Query 443638 CGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCA 443697 || || || | | ||| | | ||||| ||||| |||| || ||||| Sbjct 27066242 TCCCTTGCGTCGCGAAGAAGGCCCAATGGGCTTTGAAGTGGATCGATGGA-----TCTCA 27066296 Query 443698 GC--TTCGTCGAGCGACTAGTCGCTTTTGCTGTG-GTCGAAGGACTGTTGTTTAGCGGCA 443754 | |||| |||| | | || || || || ||| || ||||| | || || ||| | Sbjct 27066297 GACTTTCGCCGAGAGGATCGTGGCCTTCGC-GTGCGTGGAAGGGATCTTCTTCTCCGGAA 27066355 Query 443755 GCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGT 443814 |||| || |||||||||||| | || ||||| || || |||| || || ||||| Sbjct 27066356 GCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCC 27066414 Query 443815 AACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 ||||| |||||| |||||||| || | || ||||||||||| || || |||| ||| Sbjct 27066415 AACGAGCTGATCTCGCGGGACGAAGGCCTTCACTGCGACTTCGCGTGCCTGATCTATACC 27066474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588307997636320