Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq82 224 1e-53 >seq82 Length=657493 Score = 224 bits (248), Expect = 1e-53 Identities = 324/453 (72%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 139889 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139948 |||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | ||| Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 139949 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140008 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 140009 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 140068 ||| || || || || | || ||| || || ||||| ||||| || ||| | |||||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 140069 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140128 ||| ||||||||||| ||||||||| | |||| || | | ||| | |||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 140129 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCTACAAT 140188 |||||||| | ||| | |||||||||||||| || |||| ||| | ||||| |||||| Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 140189 CGA---AGCGGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAAC 140242 || || | ||| ||| ||||| | || || | ||||| | ||||| | ||| Sbjct 461120 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAAC 461173 Query 140243 ACATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGA 140302 |||||| ||||| |||||||| ||||| | |||| |||||| || || || || || Sbjct 461174 ACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 461233 Query 140303 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 140335 ||| | ||| || | || | ||||||||| Sbjct 461234 AATTTTGAAAGTTGAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535654786579200