Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq477 138 4e-28 seq82 107 7e-19 seq9 95.1 4e-15 seq19 86.0 2e-12 seq1 86.0 2e-12 >seq477 Length=38297 Score = 138 bits (152), Expect = 4e-28 Identities = 265/389 (68%), Gaps = 4/389 (1%) Strand=Plus/Minus Query 10968 TCATCCAGATGGCGAGATTGCTTCAGAATACCAGCTACATACTCCACCTTTGCTACTTGA 11027 || || | |||||| || ||| || || || || |||||||| || || ||| | Sbjct 31782 TCCTCAACATGGCGCGAAGCCTTGAGGATGCCGGCCACATACTCTACTTTCAGCACTGCA 31723 Query 11028 TGATAAGGCAACGTTATAGGCCTGTGATCCTGGTTAATGCTTGTAAATTGGTATTCTCCA 11087 | | |||| || || || || || || || || ||||| ||||| ||||| | || Sbjct 31722 TTTTGCGGCAGTGTGATTGGTCTATGGTCTTGATTGATGCTGGTAAACTGGTAGCCGCCT 31663 Query 11088 TCTCTGTCATAGCCAAGAACCTTAATCATGTTGTGTCCTTCAACGGTTCTGACAAACACC 11147 || | ||| || ||||||||||||||||| || ||| | || | || || || Sbjct 31662 TCGCGAGTGTAGTTGAGCACCTTAATCATGTTGTGACCGTCAGCTGTGCGAACGAAAACT 31603 Query 11148 TCATCACCCGGGAAT--ACTTTGGTGTTAGGCTCAATGAGTACATATTCTCCTGATTTTA 11205 |||||||| | ||| ||| |||| || || ||||| || | || || || | | Sbjct 31602 TCATCACCAG--AATGCACTGAGGTGCCTGGTTCGATGAGGACGAACTCACCAGACTGAA 31545 Query 11206 TTCTGGGCCACATGCTGTCTCCTTTCACACGAAGACCAAAGGCATCTGGATCATCGCTAT 11265 | | ||||||||||| || || |||||||| || | |||| || |||||||||| Sbjct 31544 TGCGTGGCCACATGCTATCGCCGCGAACACGAAGCCCGTATGCATTCGGGTCATCGCTAT 31485 Query 11266 AAATTTTGAGCCACCCATCGCGCTCTTCGGTCATCTCGATGGCACCATCAACACCAAGAA 11325 |||| || ||||| ||| | || | ||| ||| ||||| |||||||| || | || Sbjct 31484 AAATCTTCAGCCATCCACCACGGTACTCGACCATGTCGATCATGCCATCAACTCCTAAAA 31425 Query 11326 TTGCCTCACCAACCACGCGCACTAACCCT 11354 || |||||||| || | || | |||| Sbjct 31424 CGGCATCACCAACAACAGGGACAAGCCCT 31396 >seq82 Length=657493 Score = 107 bits (118), Expect = 7e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 21678 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 21737 |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 216771 CGGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 216830 Query 21738 TCCAGCAAGGGCCA 21751 ||||||| |||||| Sbjct 216831 TCCAGCAGGGGCCA 216844 >seq9 Length=46179939 Score = 95.1 bits (104), Expect = 4e-15 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA 22167 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 27059563 GCCTTAAAAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAACTCA 27059509 >seq19 Length=23213773 Score = 86.0 bits (94), Expect = 2e-12 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT 22159 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7785547 GCCTTAAAAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT 7785593 >seq1 Length=46747018 Score = 86.0 bits (94), Expect = 2e-12 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT 22159 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12677456 GCCTTAAAAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT 12677502 Score = 86.0 bits (94), Expect = 2e-12 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT 22159 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26927822 GCCTTAAAAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT 26927868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184441786171968