Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027990.1 Length=48211 Score E Sequences producing significant alignments: (Bits) Value seq137 107 6e-19 >seq137 Length=409738 Score = 107 bits (118), Expect = 6e-19 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25445 TAGATGATCCCTTGAAAGTTACTTCGGTTGATGTGGACACGGGTCTACTGTGCTGGGCCT 25504 |||||||||| |||||| | || || || ||| || |||| |||||||||| | Sbjct 13316 TAGATGATCCATTGAAAATAACATCTATTACTGTTGATGTGGGTAATTTGTGCTGGGCTT 13257 Query 25505 GGTTCGAGGAGGCGTACGAAATCGAAAACTCGGATAAGTTCGAAACAGTTGTTGAATCTA 25564 |||| ||||| || |||||||| ||| || ||||||| ||||||||||||||||||| Sbjct 13256 GGTTTGAGGAAGCTTACGAAATAGAAGACCAACATAAGTTTGAAACAGTTGTTGAATCTA 13197 Query 25565 TTCGTGG 25571 ||||||| Sbjct 13196 TTCGTGG 13190 Score = 107 bits (118), Expect = 6e-19 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24341 CTCATTGGCAAGGGGTACAACGAATTCTGGCACGACAAACATTTCTATCGTGTGGTCAAG 24400 || |||||| || ||||| |||||||| ||| | |||||| | || ||| Sbjct 13617 CTTATTGGCGGTGGATACAATCGTTTCTGGCATTGCAAGAACTTCTATAGAGTTTGCAAA 13558 Query 24401 GGGTCACGGGGCTCTAAGAAATCTCGGACCACTGCATTAAACTTCATCTACCGAATTATG 24460 || || || || |||||||| ||| || |||| |||||||||| | | ||||| ||| Sbjct 13557 GGTTCTCGTGGTTCTAAGAAGTCTAAAACAACTGTATTAAACTTCGTTAAACGAATCATG 13498 Query 24461 AAGTATCCTTGGTCAAACTTACTGGTGGTTCGTCGGTACTCCAATACCAATCACG-ATTC 24519 |||| || ||| | || | || ||||||||| | |||||||||| || | | | | || Sbjct 13497 CAGTACCCCTGGGCTAATCTCCTAGTGGTTCGTAGATACTCCAATA-CATTAAAGCAATC 13439 Query 24520 AACTTACACAGTTTTAAAATGGGCGATTAAC 24550 |||||| | |||||||||||| |||||| Sbjct 13438 TTGTTACACTGATTTAAAATGGGCCATTAAC 13408 Score = 107 bits (118), Expect = 6e-19 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25445 TAGATGATCCCTTGAAAGTTACTTCGGTTGATGTGGACACGGGTCTACTGTGCTGGGCCT 25504 |||||||||| |||||| | || || || ||| || |||| |||||||||| | Sbjct 56274 TAGATGATCCATTGAAAATAACATCTATTACTGTTGATGTGGGTAATTTGTGCTGGGCTT 56215 Query 25505 GGTTCGAGGAGGCGTACGAAATCGAAAACTCGGATAAGTTCGAAACAGTTGTTGAATCTA 25564 |||| ||||| || |||||||| ||| || ||||||| ||||||||||||||||||| Sbjct 56214 GGTTTGAGGAAGCTTACGAAATAGAAGACCAACATAAGTTTGAAACAGTTGTTGAATCTA 56155 Query 25565 TTCGTGG 25571 ||||||| Sbjct 56154 TTCGTGG 56148 Score = 107 bits (118), Expect = 6e-19 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24341 CTCATTGGCAAGGGGTACAACGAATTCTGGCACGACAAACATTTCTATCGTGTGGTCAAG 24400 || |||||| || ||||| |||||||| ||| | |||||| | || ||| Sbjct 56575 CTTATTGGCGGTGGATACAATCGTTTCTGGCATTGCAAGAACTTCTATAGAGTTTGCAAA 56516 Query 24401 GGGTCACGGGGCTCTAAGAAATCTCGGACCACTGCATTAAACTTCATCTACCGAATTATG 24460 || || || || |||||||| ||| || |||| |||||||||| | | ||||| ||| Sbjct 56515 GGTTCTCGTGGTTCTAAGAAGTCTAAAACAACTGTATTAAACTTCGTTAAACGAATCATG 56456 Query 24461 AAGTATCCTTGGTCAAACTTACTGGTGGTTCGTCGGTACTCCAATACCAATCACG-ATTC 24519 |||| || ||| | || | || ||||||||| | |||||||||| || | | | | || Sbjct 56455 CAGTACCCCTGGGCTAATCTCCTAGTGGTTCGTAGATACTCCAATA-CATTAAAGCAATC 56397 Query 24520 AACTTACACAGTTTTAAAATGGGCGATTAAC 24550 |||||| | |||||||||||| |||||| Sbjct 56396 TTGTTACACTGATTTAAAATGGGCCATTAAC 56366 Score = 107 bits (118), Expect = 6e-19 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25445 TAGATGATCCCTTGAAAGTTACTTCGGTTGATGTGGACACGGGTCTACTGTGCTGGGCCT 25504 |||||||||| |||||| | || || || ||| || |||| |||||||||| | Sbjct 98995 TAGATGATCCATTGAAAATAACATCTATTACTGTTGATGTGGGTAATTTGTGCTGGGCTT 98936 Query 25505 GGTTCGAGGAGGCGTACGAAATCGAAAACTCGGATAAGTTCGAAACAGTTGTTGAATCTA 25564 |||| ||||| || |||||||| ||| || ||||||| ||||||||||||||||||| Sbjct 98935 GGTTTGAGGAAGCTTACGAAATAGAAGACCAACATAAGTTTGAAACAGTTGTTGAATCTA 98876 Query 25565 TTCGTGG 25571 ||||||| Sbjct 98875 TTCGTGG 98869 Score = 107 bits (118), Expect = 6e-19 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24341 CTCATTGGCAAGGGGTACAACGAATTCTGGCACGACAAACATTTCTATCGTGTGGTCAAG 24400 || |||||| || ||||| |||||||| ||| | |||||| | || ||| Sbjct 99296 CTTATTGGCGGTGGATACAATCGTTTCTGGCATTGCAAGAACTTCTATAGAGTTTGCAAA 99237 Query 24401 GGGTCACGGGGCTCTAAGAAATCTCGGACCACTGCATTAAACTTCATCTACCGAATTATG 24460 || || || || |||||||| ||| || |||| |||||||||| | | ||||| ||| Sbjct 99236 GGTTCTCGTGGTTCTAAGAAGTCTAAAACAACTGTATTAAACTTCGTTAAACGAATCATG 99177 Query 24461 AAGTATCCTTGGTCAAACTTACTGGTGGTTCGTCGGTACTCCAATACCAATCACG-ATTC 24519 |||| || ||| | || | || ||||||||| | |||||||||| || | | | | || Sbjct 99176 CAGTACCCCTGGGCTAATCTCCTAGTGGTTCGTAGATACTCCAATA-CATTAAAGCAATC 99118 Query 24520 AACTTACACAGTTTTAAAATGGGCGATTAAC 24550 |||||| | |||||||||||| |||||| Sbjct 99117 TTGTTACACTGATTTAAAATGGGCCATTAAC 99087 Score = 107 bits (118), Expect = 6e-19 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25445 TAGATGATCCCTTGAAAGTTACTTCGGTTGATGTGGACACGGGTCTACTGTGCTGGGCCT 25504 |||||||||| |||||| | || || || ||| || |||| |||||||||| | Sbjct 141927 TAGATGATCCATTGAAAATAACATCTATTACTGTTGATGTGGGTAATTTGTGCTGGGCTT 141868 Query 25505 GGTTCGAGGAGGCGTACGAAATCGAAAACTCGGATAAGTTCGAAACAGTTGTTGAATCTA 25564 |||| ||||| || |||||||| ||| || ||||||| ||||||||||||||||||| Sbjct 141867 GGTTTGAGGAAGCTTACGAAATAGAAGACCAACATAAGTTTGAAACAGTTGTTGAATCTA 141808 Query 25565 TTCGTGG 25571 ||||||| Sbjct 141807 TTCGTGG 141801 Score = 107 bits (118), Expect = 6e-19 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24341 CTCATTGGCAAGGGGTACAACGAATTCTGGCACGACAAACATTTCTATCGTGTGGTCAAG 24400 || |||||| || ||||| |||||||| ||| | |||||| | || ||| Sbjct 142228 CTTATTGGCGGTGGATACAATCGTTTCTGGCATTGCAAGAACTTCTATAGAGTTTGCAAA 142169 Query 24401 GGGTCACGGGGCTCTAAGAAATCTCGGACCACTGCATTAAACTTCATCTACCGAATTATG 24460 || || || || |||||||| ||| || |||| |||||||||| | | ||||| ||| Sbjct 142168 GGTTCTCGTGGTTCTAAGAAGTCTAAAACAACTGTATTAAACTTCGTTAAACGAATCATG 142109 Query 24461 AAGTATCCTTGGTCAAACTTACTGGTGGTTCGTCGGTACTCCAATACCAATCACG-ATTC 24519 |||| || ||| | || | || ||||||||| | |||||||||| || | | | | || Sbjct 142108 CAGTACCCCTGGGCTAATCTCCTAGTGGTTCGTAGATACTCCAATA-CATTAAAGCAATC 142050 Query 24520 AACTTACACAGTTTTAAAATGGGCGATTAAC 24550 |||||| | |||||||||||| |||||| Sbjct 142049 TTGTTACACTGATTTAAAATGGGCCATTAAC 142019 Score = 107 bits (118), Expect = 6e-19 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25445 TAGATGATCCCTTGAAAGTTACTTCGGTTGATGTGGACACGGGTCTACTGTGCTGGGCCT 25504 |||||||||| |||||| | || || || ||| || |||| |||||||||| | Sbjct 184805 TAGATGATCCATTGAAAATAACATCTATTACTGTTGATGTGGGTAATTTGTGCTGGGCTT 184746 Query 25505 GGTTCGAGGAGGCGTACGAAATCGAAAACTCGGATAAGTTCGAAACAGTTGTTGAATCTA 25564 |||| ||||| || |||||||| ||| || ||||||| ||||||||||||||||||| Sbjct 184745 GGTTTGAGGAAGCTTACGAAATAGAAGACCAACATAAGTTTGAAACAGTTGTTGAATCTA 184686 Query 25565 TTCGTGG 25571 ||||||| Sbjct 184685 TTCGTGG 184679 Score = 107 bits (118), Expect = 6e-19 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24341 CTCATTGGCAAGGGGTACAACGAATTCTGGCACGACAAACATTTCTATCGTGTGGTCAAG 24400 || |||||| || ||||| |||||||| ||| | |||||| | || ||| Sbjct 185106 CTTATTGGCGGTGGATACAATCGTTTCTGGCATTGCAAGAACTTCTATAGAGTTTGCAAA 185047 Query 24401 GGGTCACGGGGCTCTAAGAAATCTCGGACCACTGCATTAAACTTCATCTACCGAATTATG 24460 || || || || |||||||| ||| || |||| |||||||||| | | ||||| ||| Sbjct 185046 GGTTCTCGTGGTTCTAAGAAGTCTAAAACAACTGTATTAAACTTCGTTAAACGAATCATG 184987 Query 24461 AAGTATCCTTGGTCAAACTTACTGGTGGTTCGTCGGTACTCCAATACCAATCACG-ATTC 24519 |||| || ||| | || | || ||||||||| | |||||||||| || | | | | || Sbjct 184986 CAGTACCCCTGGGCTAATCTCCTAGTGGTTCGTAGATACTCCAATA-CATTAAAGCAATC 184928 Query 24520 AACTTACACAGTTTTAAAATGGGCGATTAAC 24550 |||||| | |||||||||||| |||||| Sbjct 184927 TTGTTACACTGATTTAAAATGGGCCATTAAC 184897 Score = 107 bits (118), Expect = 6e-19 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25445 TAGATGATCCCTTGAAAGTTACTTCGGTTGATGTGGACACGGGTCTACTGTGCTGGGCCT 25504 |||||||||| |||||| | || || || ||| || |||| |||||||||| | Sbjct 356286 TAGATGATCCATTGAAAATAACATCTATTACTGTTGATGTGGGTAATTTGTGCTGGGCTT 356227 Query 25505 GGTTCGAGGAGGCGTACGAAATCGAAAACTCGGATAAGTTCGAAACAGTTGTTGAATCTA 25564 |||| ||||| || |||||||| ||| || ||||||| ||||||||||||||||||| Sbjct 356226 GGTTTGAGGAAGCTTACGAAATAGAAGACCAACATAAGTTTGAAACAGTTGTTGAATCTA 356167 Query 25565 TTCGTGG 25571 ||||||| Sbjct 356166 TTCGTGG 356160 Score = 107 bits (118), Expect = 6e-19 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24341 CTCATTGGCAAGGGGTACAACGAATTCTGGCACGACAAACATTTCTATCGTGTGGTCAAG 24400 || |||||| || ||||| |||||||| ||| | |||||| | || ||| Sbjct 356587 CTTATTGGCGGTGGATACAATCGTTTCTGGCATTGCAAGAACTTCTATAGAGTTTGCAAA 356528 Query 24401 GGGTCACGGGGCTCTAAGAAATCTCGGACCACTGCATTAAACTTCATCTACCGAATTATG 24460 || || || || |||||||| ||| || |||| |||||||||| | | ||||| ||| Sbjct 356527 GGTTCTCGTGGTTCTAAGAAGTCTAAAACAACTGTATTAAACTTCGTTAAACGAATCATG 356468 Query 24461 AAGTATCCTTGGTCAAACTTACTGGTGGTTCGTCGGTACTCCAATACCAATCACG-ATTC 24519 |||| || ||| | || | || ||||||||| | |||||||||| || | | | | || Sbjct 356467 CAGTACCCCTGGGCTAATCTCCTAGTGGTTCGTAGATACTCCAATA-CATTAAAGCAATC 356409 Query 24520 AACTTACACAGTTTTAAAATGGGCGATTAAC 24550 |||||| | |||||||||||| |||||| Sbjct 356408 TTGTTACACTGATTTAAAATGGGCCATTAAC 356378 Score = 107 bits (118), Expect = 6e-19 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25445 TAGATGATCCCTTGAAAGTTACTTCGGTTGATGTGGACACGGGTCTACTGTGCTGGGCCT 25504 |||||||||| |||||| | || || || ||| || |||| |||||||||| | Sbjct 399155 TAGATGATCCATTGAAAATAACATCTATTACTGTTGATGTGGGTAATTTGTGCTGGGCTT 399096 Query 25505 GGTTCGAGGAGGCGTACGAAATCGAAAACTCGGATAAGTTCGAAACAGTTGTTGAATCTA 25564 |||| ||||| || |||||||| ||| || ||||||| ||||||||||||||||||| Sbjct 399095 GGTTTGAGGAAGCTTACGAAATAGAAGACCAACATAAGTTTGAAACAGTTGTTGAATCTA 399036 Query 25565 TTCGTGG 25571 ||||||| Sbjct 399035 TTCGTGG 399029 Score = 107 bits (118), Expect = 6e-19 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24341 CTCATTGGCAAGGGGTACAACGAATTCTGGCACGACAAACATTTCTATCGTGTGGTCAAG 24400 || |||||| || ||||| |||||||| ||| | |||||| | || ||| Sbjct 399456 CTTATTGGCGGTGGATACAATCGTTTCTGGCATTGCAAGAACTTCTATAGAGTTTGCAAA 399397 Query 24401 GGGTCACGGGGCTCTAAGAAATCTCGGACCACTGCATTAAACTTCATCTACCGAATTATG 24460 || || || || |||||||| ||| || |||| |||||||||| | | ||||| ||| Sbjct 399396 GGTTCTCGTGGTTCTAAGAAGTCTAAAACAACTGTATTAAACTTCGTTAAACGAATCATG 399337 Query 24461 AAGTATCCTTGGTCAAACTTACTGGTGGTTCGTCGGTACTCCAATACCAATCACG-ATTC 24519 |||| || ||| | || | || ||||||||| | |||||||||| || | | | | || Sbjct 399336 CAGTACCCCTGGGCTAATCTCCTAGTGGTTCGTAGATACTCCAATA-CATTAAAGCAATC 399278 Query 24520 AACTTACACAGTTTTAAAATGGGCGATTAAC 24550 |||||| | |||||||||||| |||||| Sbjct 399277 TTGTTACACTGATTTAAAATGGGCCATTAAC 399247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154151081130176