Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq82 104 6e-18 >seq82 Length=657493 Score = 104 bits (114), Expect = 6e-18 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 41187 ATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCT 41246 ||||| | ||||| | ||||| ||| | ||||| ||||| | || ||||| | Sbjct 206170 ATTGGGCATTTAGGTCAAGATCCTGAAGTTCGTTATATGCCTAATGGTAATGCGGTAGTG 206111 Query 41247 AATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAA 41306 ||| | | | || || | |||| ||||| ||||||| || || || || |||||| Sbjct 206110 AATATGACATTAGCAACTTCAGAAAATTGGAAAGATAAAAATACTGGAGAAAATAAAGAA 206051 Query 41307 CAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATAC 41366 |||| |||||||| | | || | || ||||| | || |||||||| ||||||| Sbjct 206050 AAAACTGAATGGCATAGAATAGTTTTATTTGGTAAATTAGCTGAAATTGCAGGCGAATAT 205991 Query 41367 CTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGAC 41426 || || |||||| | || | |||||||| ||| ||| | ||||||||||| Sbjct 205990 CTTCGAAAAGGTTCTCAAGTATATATTGAAGGATCATTGCAAACTAGAAAATGGCAGGAT 205931 Query 41427 CAGGCTGGCGTTGATCGCTACACCACTGAAAT 41458 || ||| | || |||||||| || ||||| Sbjct 205930 CAAAATGGTTTAGAACGCTACACTACAGAAAT 205899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133207423355136