Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq87 134 2e-26 seq15 132 6e-26 seq8 129 7e-25 seq7 116 5e-21 seq6 113 6e-20 seq13 104 3e-17 seq2 100 4e-16 seq5 95.1 2e-14 seq11 82.4 1e-10 >seq87 Length=644924 Score = 134 bits (148), Expect = 2e-26 Identities = 298/445 (67%), Gaps = 4/445 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | ||| | |||| ||||| ||||| | | || || || Sbjct 379136 CGGTCAAAACGGCCGGGTCTAAGCAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 379077 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| ||| | || ||||| | | ||||| ||||||||||| || || | || ||| Sbjct 379076 GCAACAACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 379017 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACC 11629 | || |||||||| |||||||| || | ||||| | | |||| | || || Sbjct 379016 AGCGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCAACA 378957 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||||||||| | ||||||||||| || || || ||| ||| || ||| Sbjct 378956 GCATCAATCTCATCCACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAAAGA 378897 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || ||||| ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 378896 TCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG--A 378839 Query 11750 TGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| | ||| || || | |||||| || ||||| || | ||| || || || | Sbjct 378838 TGGAAAAGAACGGTACGCCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCCAG 378779 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 |||| || ||| |||| || | ||| |||||| ||||| || | | Sbjct 378778 TACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAACC 378719 Query 11868 TCTCGGGTTGCTTGAGAAAATCCAC 11892 |||| || | ||| ||||| ||||| Sbjct 378718 TCTCAGGCTTCTTCAGAAACTCCAC 378694 >seq15 Length=39600445 Score = 132 bits (146), Expect = 6e-26 Identities = 300/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | | | |||| ||||| ||||| | | || || || Sbjct 9762823 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 9762882 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | || ||| Sbjct 9762883 GCAACCACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 9762942 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC---ACCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || ||| ||||| | | |||| | || Sbjct 9762943 AGCGTCTGTTCTCTTTCATCATTACCTCC---ACCGATACCAGTCCCTCTTTGCCTACCA 9762999 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||||||||| | ||||||||||| || || || ||| ||| || Sbjct 9763000 ACAGCATCAATCTCATCCACAAAGACAATACACGGAGCGTTCTCCTTGGCCTTTTTGAAA 9763059 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || ||||| ||||| ||||||||||||||||| ||||| | | ||||| Sbjct 9763060 AGATCACGGACCCTCGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCAGAG 9763119 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || ||||| || | ||| || || | Sbjct 9763120 --ATGGAAAAGAACGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCC 9763177 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | || || || ||| ||||||| | ||| |||||| ||||| || Sbjct 9763178 CAGTTCCAGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGA 9763237 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||| ||||| ||||| Sbjct 9763238 ACCTCTCAGGCTTCTTCAGAAACTCCAC 9763265 >seq8 Length=24646021 Score = 129 bits (142), Expect = 7e-25 Identities = 297/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | |||| ||||| ||||| | | |||||| || Sbjct 23191401 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 23191460 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| ||| | || ||||| | | ||||| ||||||||||| || | | ||||| Sbjct 23191461 GCAACAACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAAAGCTGATTC 23191520 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || || ||||| |||||||| || |||| |||| | | ||| | || Sbjct 23191521 AAGGTCTGCTCTCTTTCATCATTCCCT---CCACCAATCCCAGTTCCTCTCTGCCTACCA 23191577 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||||||||| || | ||||||||||| || ||| || || | | || Sbjct 23191578 ACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTCTTGAAA 23191637 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || ||||| ||| || ||||| ||||||||||| || || | | | ||| Sbjct 23191638 AGATCACGCACCCTCGAGGCCCCAACACCGACAAACATCTCAACGAACTCAGACCCCGAG 23191697 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 || ||| || ||| | ||||| || |||||| ||| | |||||| || || Sbjct 23191698 ATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGGGTTTTACCA 23191757 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATAT 11866 || || || ||| |||| ||| | ||| |||||| ||||| || | Sbjct 23191758 GTCCCAGGAGGACCAACGAGGAGGACACCTTTAGGGATCCGAGCACCGACCGCAGTGAAC 23191817 Query 11867 CTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||| || | ||||||||| ||||| Sbjct 23191818 CTCTCAGGCTTCTTGAGAAACTCCAC 23191843 >seq7 Length=43258566 Score = 116 bits (128), Expect = 5e-21 Identities = 217/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || || || ||||||||||| || Sbjct 36921380 AAACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT-- 36921437 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| ||||||||||| |||||||| |||||| Sbjct 36921438 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCGTCAATGAAAACAATA 36921497 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | || | || || | ||| | |||||| ||||||||||||| Sbjct 36921498 CAAGGCGCCTTGGCCTTAGCCTTCTCGAACAAATCCCTAACCCTAGAGGCACCCACACCA 36921557 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || || | ||||||||| | | || | ||| || ||| || || | ||| || Sbjct 36921558 ACGAAAAGCTCCACAAACTCAGACGCCGCGCAGGAGAAGAACGGCACTCCGGCTTCTCCA 36921617 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 || | |||| || | || ||||| || || || || |||| |||| || ||| Sbjct 36921618 GCCACAGCTCTAGCTAACAGAGTCTTCCCAGTCCCGGGGGGACCCACGAGGAGACACCCT 36921677 Query 11837 CGGGGGATCTTGGCACC 11853 ||| |||||||| || Sbjct 36921678 TTGGGAATCTTGGCGCC 36921694 >seq6 Length=47127078 Score = 113 bits (124), Expect = 6e-20 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || ||||| || || | || || |||||| || ||| |||||||| || Sbjct 44872399 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCC 44872340 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 44872339 TCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCA 44872280 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 |||||||| | | | |||||||| | |||| | | || | ||| ||||| || Sbjct 44872279 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 44872223 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| ||||||||| Sbjct 44872222 CCATTGGGCCTTCTTC 44872207 >seq13 Length=54295181 Score = 104 bits (114), Expect = 3e-17 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || ||||| || || || || || |||||| || || |||||||| || Sbjct 40048157 GTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTAAGCCCCGGCATGAGCCC 40048216 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 40048217 TCGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCA 40048276 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || ||||| | | | |||||||| | |||| | | || | ||| ||||| || Sbjct 40048277 AGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 40048333 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| ||||||||| Sbjct 40048334 CCATTGGGCCTTCTTC 40048349 >seq2 Length=31488241 Score = 100 bits (110), Expect = 4e-16 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || || || || || || || || |||||| || || |||||||| || Sbjct 7376989 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 7377048 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 7377049 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 7377108 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 ||| || || | | | |||||||| | |||| | |||| | ||| |||| || Sbjct 7377109 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAAGC 7377165 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| ||||||||| Sbjct 7377166 CCATTGGGCCTTCTTC 7377181 Score = 100 bits (110), Expect = 4e-16 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || || || || || || || || |||||| || || |||||||| || Sbjct 27066447 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 27066388 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 27066387 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 27066328 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 ||| || || | | | |||||||| | |||| | |||| | ||| |||| || Sbjct 27066327 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAAGC 27066271 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| ||||||||| Sbjct 27066270 CCATTGGGCCTTCTTC 27066255 >seq5 Length=35747119 Score = 95.1 bits (104), Expect = 2e-14 Identities = 244/371 (66%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| || ||||| | | | ||| ||||| || || | | ||| || || Sbjct 10003059 CGGTCAAACCGTCCCGGCCTCAACAAAGCGGAGTCAAGAATGTCTGCTCTATTGGTCGCA 10003000 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| ||| | || ||||| | | ||||| ||||||||||| || | | || || Sbjct 10002999 GCAACAACGATGATACCAGTGTTACCTTCAAACCCATCCATCTCAGTTAACAGCTGGTTC 10002940 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC-AGCACTG-----CGTTGCTTG 11623 | || ||||||||||||||||| || ||||| | | ||| | ||| | Sbjct 10002939 AAAGTCTGTTCTCTCTCATCATTACCT------CCACCGATCCCTGTCCCTCTCTGCCTC 10002886 Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || |||||||||||||||| ||||| || || || || || || | | Sbjct 10002885 CCAACAGCATCAATCTCATCAACAAAGACGATGCAAGGAGCGTTCTCCTTAGCCTTCTTG 10002826 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || ||||| || ||||| ||||| ||||| ||||||||||| ||||| | | | Sbjct 10002825 AAAAGATCACGGACCCTGGAAGCACCAACACCGACAAACATCTCAACAAACTCGGACCCG 10002766 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 ||| || ||| || || | |||||| || || ||| || || || ||||| Sbjct 10002765 GAGATAGAGAAGAACGGCACGCCAGCTTCACCAGCTATAGCTTTCGCCAGAAGCGTCTTC 10002706 Query 11804 CCCGTACCTGG 11814 || ||||| || Sbjct 10002705 CCAGTACCAGG 10002695 >seq11 Length=45114658 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | || || |||||| || || |||||||| || |||||| Sbjct 34047527 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 34047468 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | |||||| |||||||||||||| || || || || || || Sbjct 34047467 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 34047408 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | | |||||||| | |||| | | || | ||| |||| ||||||| Sbjct 34047407 GCGACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATGGCCCATTGG 34047351 Query 122857 GCCTTCTTC 122865 ||||||||| Sbjct 34047350 GCCTTCTTC 34047342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628021197849600