Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq82 212 7e-50 >seq82 Length=657493 Score = 212 bits (234), Expect = 7e-50 Identities = 315/447 (70%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 81493 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 81552 |||||| | ||| | || || ||||||| | ||||| | | |||||||| | ||| Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 81553 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 81612 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 81613 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 81672 ||| || || || || | || ||| || || ||||| ||||| || ||| | |||||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 81673 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 81732 ||| ||||||||||| ||||||||| | |||| || | | ||| | |||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 81733 AGCACGAATCATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAAT 81792 |||||||| | || | ||||| |||||||| || |||| ||||| ||||| ||||| Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 81793 TGAAGCAGAAGCTTTATTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCATGA 81852 ||| || || ||||| || | | |||| || |||||| | ||| ||||| Sbjct 461120 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 461179 Query 81853 ACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTG 81912 ||||| |||||||| ||||| | |||| |||||| || || || || ||||| | Sbjct 461180 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 461239 Query 81913 TCGAGTAGATACTGCTTCATAAAAACG 81939 ||| || | || | ||||||||| Sbjct 461240 GAAAGTTGAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535757184817920