Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq16 123 2e-23 seq114 100 2e-16 seq2 100 2e-16 seq3 93.3 3e-14 seq1 86.0 5e-12 >seq16 Length=39632211 Score = 123 bits (136), Expect = 2e-23 Identities = 190/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 || |||||||| || || | | |||||||| || || || | || | |||||| Sbjct 38024990 TACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGTTCACACACGTGA 38025049 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || | |||| | || || ||||||||| ||||||||||| || || || || ||||| Sbjct 38025050 GCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGGCCCATA 38025109 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 30073 ||| |||| | ||| || | ||| ||||||||||| || || ||| || ||||| | Sbjct 38025110 TCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 38025169 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 |||| ||||||||||||||| ||||| || | || |||||||| || | Sbjct 38025170 AACAT---GTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCAGAT 38025226 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTC 30163 | ||||| |||| || || || |||||| Sbjct 38025227 AATATGATACGCCGATCATCAGGATTGTTC 38025256 >seq114 Length=481428 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 455462 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 455403 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 455402 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 455343 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 455342 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 455286 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || || | || || || |||||| |||| Sbjct 455285 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 455244 >seq2 Length=31488241 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 13040184 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 13040125 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 13040124 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 13040065 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 13040064 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 13040008 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || || | || || || |||||| |||| Sbjct 13040007 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 13039966 >seq3 Length=51870232 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 29951 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 30010 |||||||| | |||| | || || ||||||||| || |||||||| || || | || Sbjct 35473419 ACGTGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACATCAAGG 35473360 Query 30011 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 30070 ||||| ||| | || | ||| || | || || || ||||| || || ||| || ||| Sbjct 35473359 CCCATATCCGCTGAACGCTGATACATCTTGCATGAAAGCTCCCCTTCCGCCACATAGAAC 35473300 Query 30071 TG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127 || | ||||| ||||||||||| || ||||| || | ||| |||||||| Sbjct 35473299 TGTGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAA 35473243 Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || | | ||||| |||| || || || |||||| |||| Sbjct 35473242 GCAGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 35473202 >seq1 Length=46747018 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||| ||||| | || | || || || ||||| ||| |||||||| ||||| || || Sbjct 3084334 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 3084275 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||| || |||||||| | | |||||||| Sbjct 3084274 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 3084215 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 3084214 CTGAGCAAACAT---GTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 3084158 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || || | || || || |||||| |||| Sbjct 3084157 AGCCGACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 3084116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406303586174592