Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028677.1 Length=46596 Score E Sequences producing significant alignments: (Bits) Value seq18 230 7e-56 seq8 120 9e-23 >seq18 Length=36757632 Score = 230 bits (254), Expect = 7e-56 Identities = 489/717 (68%), Gaps = 30/717 (4%) Strand=Plus/Plus Query 30491 CTGTTCGGGGTCCACTACCGAGAATCGGATTCGACGGATGAAGTACCGGGAGAAGATCGG 30550 ||| ||| ||||| |||||||| ||||| || |||||||||||||||||||||||||| Sbjct 22717053 CTGGTCGTTGTCCAGCACCGAGAACCGGATGCGCCGGATGAAGTACCGGGAGAAGATCGG 22717112 Query 30551 GTGGATACCCTCACTGACTCCAGGCATCTTTGCGATCGTGCCGGTAGGAGCAACCGTGGT 30610 |||||||||||||||||||||||||||||| ||||| || || || || || |||||| Sbjct 22717113 GTGGATACCCTCACTGACTCCAGGCATCTTCGCGATGGTCCCTGTCGGGGCCACCGTGCG 22717172 Query 30611 GGTCTTGATCGGGGTCGGGATACGCAACTGATGTGCGTAGTCACGAGC--CTCGGACTGA 30668 |||||| ||| |||||| ||||||| ||| | | || || ||| | | || Sbjct 22717173 CTTCTTGACCGGCACCGGGATCCGCAACTCATGGCTGAACTCCTCGGCCGCTCTGTC-GA 22717231 Query 30669 AC-CAGGAAACGG-TAGAT-CCGCAGTTCCTCTCGGAAGTCCTCGTTGGCCGGCGCATCC 30725 | ||| ||| | | ||||| | ||| || || | || || | | Sbjct 22717232 CCTCAG----CGGCCATCTCCCGCAAGAAAGCGGTGAACCGCTTGTCTCCGGGTGCCTGC 22717287 Query 30726 GAGTAGCGGATGCCACGGAGAGCCAGGTGGGAGGCAACTCCCAAGTGACCCACACCGATT 30785 || || | ||| || |||| | |||||| ||||| | ||| || |||||||| Sbjct 22717288 GAATACCTACGGCCTGTCAGGGCCAAATAGGAGGCCACTCCGAGGTGCCCAACACCGATG 22717347 Query 30786 CGACGCTGTCGAGCGAGCTGGTCCTGTTGCTTCGGATCGTTTACGTCACCGAACGTAGCT 30845 || || | ||| | || || | ||||||||| || | |||||| || Sbjct 22717348 CGCCGGTTGCGATCCAGAACCTCTCGGCTCTTCGGATCAGCGACCGCTGAGAACGTCGCC 22717407 Query 30846 CGGATCAGGAACCGTGCAACCAACCGGTGTGCTCGGTAAAGCCCGATGGTGTCCACATGA 30905 |||||||||||||| | | || ||||| |||||| || ||||| ||| | Sbjct 22717408 CGGATCAGGAACCGCGTCATCAGACGGTGGGCTCGGATCAGGTCGATGTAGTCGGTCTTC 22717467 Query 30906 CCGGTGTCATCTACGAACGCCGCCAGGTTGACGTGTCCCAGGTTGCAGTTCTCCCACGGG 30965 |||| ||| ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 22717468 CCGGCGTCGGTGACGAACGCCGCGAGGTTGATGTGCCCTAGGTTGCAGGGCTCCCACGGC 22717527 Query 30966 GTAAGTGCGATCTCACCACAAGGGTTCGTGCAGACCGCC-CGTTCAACCTCCCCGTCGTT 31024 || | |||||| || || ||||| |||||||| || |||| ||| ||| |||| Sbjct 22717528 TCCAGCGTGATCTCCCCGCACGGGTTGGTGCAGACGACCTCGTT-GGGCTCACCGACGTT 22717586 Query 31025 GGACAGGTCGGAGTTCCAGGTACCAGGCTCACCGTTGTTCAGTGCGCCCTTGGAGA---- 31080 ||||||| | || ||| | || ||||| |||||| | || |||| ||||| Sbjct 22717587 GGACAGGCTGCTGTCCCACATCCCCGGCTCGCCGTTGCGTACGGCTCCCTCGGAGAGAGC 22717646 Query 31081 TTTCAG--CCAGGACTTTCTTTGCGTGAACACCCATGTCGGTGTCCTCGTCGTCATCAGC 31138 ||||| || || | ||| |||| | | | || || | |||| || ||| Sbjct 22717647 CTTCAGCACCCGGTGTGCCTT--CGTGGA-GCGCGGGT---TGAGCGGGTCGACAGGAGC 22717700 Query 31139 GTT------GTTCCAGAACCTCTGGTCAACTTCGACGGAGATGTTCGTGGTCCAGTG 31189 || | |||||||| | ||| || ||||| |||||||||||||||||||| Sbjct 22717701 CTTGGCCAGGCTCCAGAACGCATCGTCCACCTCGACCGAGATGTTCGTGGTCCAGTG 22717757 Score = 87.8 bits (96), Expect = 5e-13 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 31240 CCCAGCGCATCATTGCCATTCGAGCCGAACGGCGATTACCGCCAGACACAACACATTCCG 31299 ||||| ||||||| ||||| |||||||| |||||| ||| || | ||| ||||| | || Sbjct 22717849 CCCAGTGCATCATCGCCATGCGAGCCGACCGGCGAACACCTCCGGCCACCACACACTGCG 22717908 Query 31300 CGAGATGATGGTCAATCTCCATCGCTCCCAGACCGGTCAGC 31340 ||| ||||| ||||||||||| | |||||||||||| Sbjct 22717909 CGATGGCGTGGTCGATCTCCATCGCATCGAGACCGGTCAGC 22717949 >seq8 Length=24646021 Score = 120 bits (132), Expect = 9e-23 Identities = 541/843 (64%), Gaps = 66/843 (8%) Strand=Plus/Minus Query 7816 TCCTCCAGCAGCTCGCCCGCAAGATCGACATGGGTCCGACCGGCGTAACCGTTCCGTACT 7875 || |||||||| |||||| ||| | |||||| | || ||| | | ||| ||| Sbjct 19507193 TCGTCCAGCAGTTCGCCCAGAAGGTGCCGATGGGTACCACGGGCCAGAAGATCCCGCACT 19507134 Query 7876 GGGATGGTGAAGTCACCGCTGCGTGGACCGCAGAAGGTGGCAAGAAGCCCCTCACCAAGG 7935 ||| || || || | || ||||| || || |||| || ||||||| ||||||||| Sbjct 19507133 GGGTCGGCGACGTGAGTGCCCAGTGGATCGGTGAGGGTGACATGAAGCCCATCACCAAGG 19507074 Query 7936 GCGGCTTCGACATGTTCGGTGTTCAGCCGGCC----AAGATTGCCACGATTTTCGCCATG 7991 || | | ||| |||| | || | ||| ||||| || ||||| |||| || Sbjct 19507073 GCAACAT-GAC---TTCGCAGACCATCGCGCCCCACAAGATCGCGACGATCTTCG---TG 19507021 Query 7992 AGCTCTGAGGT---CGTGCGAGCTAACCCCGAGGGTTACATCGAGACCATGAAGGAGAAG 8048 |||| || ||| || || ||||||| ||| | | |||||| ||| Sbjct 19507020 GCGTCTGCGGAGACCGTCCGTGCCAACCCCGCCAACTACCTGGGAACCATGCGTACCAAG 19506961 Query 8049 GTCGCGGAAGCATTCGCGGTTGCCTTCGACAACGCCGGTTTCCATGGTACGAACACCCCG 8108 || ||| || |||||| | || |||||| ||| | | || || || ||| |||| Sbjct 19506960 GTGGCGACCGCCTTCGCGATGGCGTTCGACGGCGCGGCGATGCACGGCACCGACAGCCCG 19506901 Query 8109 TTCGGTGCGTACATCGACCAGTCCACCAAGGCTGTCAGCCTT------ACCCCGGCTGAT 8162 ||| | ||||||| ||| |||||||||| || || ||| | | || Sbjct 19506900 TTCCCGACCTACATCGGTCAGACCACCAAGGCCATCTCGATTGCTGACACCACCGGTGCC 19506841 Query 8163 CCGGC----TACGACCTACGATGCGTTCAACAACTCGCTCGAGGTT-CTGGTCGAAGACG 8217 || | ||||||| | | || | ||| | || ||| | ||||| | |||| Sbjct 19506840 ACGACCGTGTACGACC-AGGTGGCCGTGAACGGC---CT-GAGCCTGCTGGTGAACGACG 19506786 Query 8218 GTAAGCGTCTGAGCGGCTTCCTCTTGGATGAGAAGGCTGAGCCGCTCATCAACGGTGCGA 8277 | ||| || | | ||| |||| || | | |||||| || | ||||| |||| Sbjct 19506785 GCAAGAAGTGGACCCACACCCTTCTGGACGACATCACCGAGCCGATCCTGAACGGCGCGA 19506726 Query 8278 CGGACAAGAACAACCGTCCGCTGTTCCTGGATGCCAACTACACCGAGACCAACGA-CCTT 8336 |||| ||||| || ||||||||| | || | | |||| ||| || ||| || Sbjct 19506725 AGGACCAGAACGGTCGCCCGCTGTTCATCGAGTCGACCTACGGTGAGGCCG-CGAGCCCG 19506667 Query 8337 ATGCGTCGTGGCCGCATCCTCTCGCGTCCCGCCCTGTTCGCGGACCGCGTTGGTACCGCT 8396 | ||| ||||| ||| || | ||||| || | || |||| ||| | | Sbjct 19506666 TTCCGTTCGGGCCGGATCGTCGCCCGTCCGACCATCCTCAGCGACCACGTCG-------T 19506614 Query 8397 GCGACCCAGGCCGCTCCCGAGACCATCGGCT--ATGCCGGTGACTGGAGCAAGGTTCTCT 8454 | ||| || || || |||||| ||| ||||||| | || | ||| Sbjct 19506613 GG-----AGG--GCACC----ACGGTCGGCTTCATG--GGTGACTTCTCCCAGCTCATCT 19506567 Query 8455 GGGGCCAGATCGGTGGCATCAGCTACGACGTTTCGGATCAGGCAACGCTGACCCTCG--A 8512 ||||||||||||| || | || |||||| |||||||||| || |||| ||| | | Sbjct 19506566 GGGGCCAGATCGGCGGTCTGTCCTTCGACGTGACGGATCAGGCGACCCTGAACCTGGGCA 19506507 Query 8513 CGG---------CGAACT-CGTTTCGCTGTGGGAGCACAACCTTGTCGCTGTCCGTTGCG 8562 | | |||||| ||| ||||||||| |||||||||| ||||| |||||| || Sbjct 19506506 CCGTCGAGAGCCCGAACTTCGTCTCGCTGTGGCAGCACAACCTCGTCGCAGTCCGTGTCG 19506447 Query 8563 AGGCTGAGTTCGCTATCCACGTCCACGACGTGGAGTCGTTCGCCAAGCTGACCAAGGGCG 8622 ||||||||| ||| ||||| | |||||| ||| |||||| | |||||||| | | Sbjct 19506446 AGGCTGAGTACGCGTTCCACTGCAACGACGCCGAGGCGTTCGTCGCTCTGACCAACGTGG 19506387 Query 8623 TCA 8625 ||| Sbjct 19506386 TCA 19506384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148983165575296