Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028680.1 Length=50515 Score E Sequences producing significant alignments: (Bits) Value seq18 149 2e-31 seq9 149 2e-31 >seq18 Length=36757632 Score = 149 bits (164), Expect = 2e-31 Identities = 394/589 (67%), Gaps = 31/589 (5%) Strand=Plus/Plus Query 42043 CCATGAAGTAGATCCCGCGCT--GGA-CGTCGAGGCCGTAGAGCTTCTTCAGCGCCAGCG 42099 ||||||||||| ||| || ||| | |||| |||||| | || | ||| |||| Sbjct 22718198 CCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCGAGCG 22718257 Query 42100 CGTACACCGCCAGCTGGAAGTCATCCCCCGGCTTAAGGCCAGTCTTGTGGTCTACAACCA 42159 ||||||| | ||||||||||| || ||||| | || ||||||| ||| || Sbjct 22718258 CGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGGAC-- 22718315 Query 42160 TCG--GTTCACCTTCGAGGATCAGTACCGCGTCGATGAAGCCTCTGATCTGGATATCCCC 42217 ||| | || || |||| | | || ||||||||| | || | | | |||| | | Sbjct 22718316 TCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCGTC 22718375 Query 42218 GAGCATGAAGTCAAGATCCAGCTCGATCCCGGGCTTGCCGTCCGGGGTGCTCCATACCTC 42277 |||| || || | | |||||||||| | ||| | ||||||||||| ||| | ||| Sbjct 22718376 GAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATCTC 22718435 Query 42278 CAGCGAGGGATGGTTCTCGATCCAGTCGATGACCTTATCCACCTGCTCCAGCCCGATCTT 42337 | | ||| |||| ||| ||| || ||| || ||||||||||| |||| | Sbjct 22718436 CTGGCCCGGAG---TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACGGT 22718492 Query 42338 CCAGCGTCGCTCGACGTCGTCG-GGGCCGCGGTACGGCCCGGACGAGAACCACCAGTCGA 42396 | || ||||||| ||| ||| | ||| |||||| || ||| | |||||| |||| Sbjct 22718493 GTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCGA 22718551 Query 42397 GGTTCGGCGTGACGTCCGTGGACTCGCTGATGCCTTCCTGGTACG-AGTCC---TTGAAC 42452 |||||| || | || ||| | | | | | | | ||| || ||| | |||| Sbjct 22718552 AGTTCGGGGTCTCCTCGGTGAAGGCTCCAACGTCGT--TGG--CGTAGTGCCAACGGAAC 22718607 Query 42453 ACCTCGTACGCCTCTTCGCGGGTCATCGGGCCACCCGGCTCGAAACCCAGCCGGCGA-AG 42511 | || | ||||| || | |||| ||| || | | || |||| | ||| | Sbjct 22718608 ATGTCCTTGGCCTCGTCAAGCGTCAGCGG--CATGCCGTAGGACTCCCATACCTCGACCG 22718665 Query 42512 CATGTAGTGCTCGGCCACCGCGTGGACCGCGGTCCCCTGCTGGAGCCACGCCGCCGGTCG 42571 | ||| || || ||||||| ||| ||||||||| | ||||| ||||| || || Sbjct 22718666 C--------CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCG 22718717 Query 42572 ACGCCAGACCTTGTCAATCCGGGCCAGCTTGTACGCCATCGGGCATTTC 42620 |||| |||||||| ||||| || |||||||||||||||||||| ||| Sbjct 22718718 CTGCCACACCTTGTCGATCCGAGCGAGCTTGTACGCCATCGGGCACTTC 22718766 >seq9 Length=46179939 Score = 149 bits (164), Expect = 2e-31 Identities = 394/589 (67%), Gaps = 31/589 (5%) Strand=Plus/Minus Query 42043 CCATGAAGTAGATCCCGCGCT--GGA-CGTCGAGGCCGTAGAGCTTCTTCAGCGCCAGCG 42099 ||||||||||| ||| || ||| | |||| |||||| | || | ||| |||| Sbjct 16532146 CCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCGAGCG 16532087 Query 42100 CGTACACCGCCAGCTGGAAGTCATCCCCCGGCTTAAGGCCAGTCTTGTGGTCTACAACCA 42159 ||||||| | ||||||||||| || ||||| | || ||||||| ||| || Sbjct 16532086 CGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGGAC-- 16532029 Query 42160 TCG--GTTCACCTTCGAGGATCAGTACCGCGTCGATGAAGCCTCTGATCTGGATATCCCC 42217 ||| | || || |||| | | || ||||||||| | || | | | |||| | | Sbjct 16532028 TCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCGTC 16531969 Query 42218 GAGCATGAAGTCAAGATCCAGCTCGATCCCGGGCTTGCCGTCCGGGGTGCTCCATACCTC 42277 |||| || || | | |||||||||| | ||| | ||||||||||| ||| | ||| Sbjct 16531968 GAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATCTC 16531909 Query 42278 CAGCGAGGGATGGTTCTCGATCCAGTCGATGACCTTATCCACCTGCTCCAGCCCGATCTT 42337 | | ||| |||| ||| ||| || ||| || ||||||||||| |||| | Sbjct 16531908 CTGGCCCGGAG---TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACGGT 16531852 Query 42338 CCAGCGTCGCTCGACGTCGTCG-GGGCCGCGGTACGGCCCGGACGAGAACCACCAGTCGA 42396 | || ||||||| ||| ||| | ||| |||||| || ||| | |||||| |||| Sbjct 16531851 GTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCGA 16531793 Query 42397 GGTTCGGCGTGACGTCCGTGGACTCGCTGATGCCTTCCTGGTACG-AGTCC---TTGAAC 42452 |||||| || | || ||| | | | | | | | ||| || ||| | |||| Sbjct 16531792 AGTTCGGGGTCTCCTCGGTGAAGGCTCCAACGTCGT--TGG--CGTAGTGCCAACGGAAC 16531737 Query 42453 ACCTCGTACGCCTCTTCGCGGGTCATCGGGCCACCCGGCTCGAAACCCAGCCGGCGA-AG 42511 | || | ||||| || | |||| ||| || | | || |||| | ||| | Sbjct 16531736 ATGTCCTTGGCCTCGTCAAGCGTCAGCGG--CATGCCGTAGGACTCCCATACCTCGACCG 16531679 Query 42512 CATGTAGTGCTCGGCCACCGCGTGGACCGCGGTCCCCTGCTGGAGCCACGCCGCCGGTCG 42571 | ||| || || ||||||| ||| ||||||||| | ||||| ||||| || || Sbjct 16531678 C--------CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCG 16531627 Query 42572 ACGCCAGACCTTGTCAATCCGGGCCAGCTTGTACGCCATCGGGCATTTC 42620 |||| |||||||| ||||| || |||||||||||||||||||| ||| Sbjct 16531626 CTGCCACACCTTGTCGATCCGAGCGAGCTTGTACGCCATCGGGCACTTC 16531578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161523760658624