Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq82 82.4 9e-11 >seq82 Length=657493 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 139414 CCATTCAATTCTGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGTTTCTCA 139473 ||||| || ||||| || ||| || ||||||||||| ||| |||||||||||| ||| Sbjct 395500 CCATTTAAATCTGGATCTGAAATTAATCCTTTCCAACCAACAACTGTTCTTGGTTTTTCA 395441 Query 139474 AAATAAACACGC---ATAACCAAAAGAAGATTTGGAAATTGTTTTTGTACTTCGGCTAAA 139530 ||||| |||| |||| |||| ||| | | ||| | ||| ||| ||| Sbjct 395440 AAATATGTACGCATTATAATTTCAAGACGATCTTTATATTTTACGCGTAATTCATATAAT 395381 Query 139531 CGTTCGCCGTATTCGAGAGCAGCTTTAGGGTCATGAATTGAACAAGGGCCTACAACAATA 139590 | | | ||||| | ||||| |||| ||||||| |||||| || |||| |||| | Sbjct 395380 CTATGTGCATATTCTACTGCAGCAATAGGATCATGAACTGAACATGGTCCTATGACAACA 395321 Query 139591 ATTTTGCGTGGGTCTTCGCCATTCATAAT 139619 | | | | ||||| ||| ||||||| Sbjct 395320 AGTAATCTTAAATCTTCTCCAGTCATAAT 395292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568319824730880