Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq82 203 3e-47 >seq82 Length=657493 Score = 203 bits (224), Expect = 3e-47 Identities = 318/455 (70%), Gaps = 0/455 (0%) Strand=Plus/Plus Query 128633 CATCAGGTTATTAATCTGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACC 128692 ||||| |||||||| || || ||||||| | ||||| | | ||||| || | || Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 128693 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 128752 | || || || | || | | |||||| ||| || ||||| |||||||| | | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 128753 TGTCGCCGCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 128812 || ||||| ||||| | ||||| ||||| || |||||||| || || |||| || || Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 128813 CTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTC 128872 || | ||||||||| |||||||| |||| || || ||| |||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 128873 TGCACGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAAT 128932 ||||||||| | || |||||||||||||| ||||| || | | | |||||| ||| Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 128933 TGACGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGA 128992 || || || ||||||| |||| ||| ||||| | | |||||| | || ||||| Sbjct 461120 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 461179 Query 128993 ACTAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCTT 129052 ||||| || || || ||||| | ||| |||||||||||||| || || || ||||| || Sbjct 461180 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 461239 Query 129053 TTTAGTAGAAACTGCATCATAGAAACGAATAACGT 129087 ||| |||| |||| ||| ||||| ||||| Sbjct 461240 GAAAGTTGAAATGGCATTATAAAAACGCTGAACGT 461274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532064448334080