Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028757.1 Length=50768 Score E Sequences producing significant alignments: (Bits) Value seq18 453 4e-123 seq8 376 8e-100 seq9 309 1e-79 seq1 196 2e-45 >seq18 Length=36757632 Score = 453 bits (502), Expect = 4e-123 Identities = 624/876 (71%), Gaps = 70/876 (8%) Strand=Plus/Plus Query 34248 CATCGACAACCGAACTCGCCGGATGAAGTAGCGCGAGAAGATCGGGTGAATCCCCTCGGA 34307 || ||| ||||| | |||||||||||||| || |||||||||||||| || ||||| Sbjct 22717068 CACCGAGAACCGGATGCGCCGGATGAAGTACCGGGAGAAGATCGGGTGGATACCCTCACT 22717127 Query 34308 GACACCAGGCATCTTCGCGATGGTCCCCGTGGGGGCCACCGTGCGCTTCTTCACGGGCAC 34367 ||| ||||||||||||||||||||||| || |||||||||||||||||||| || ||||| Sbjct 22717128 GACTCCAGGCATCTTCGCGATGGTCCCTGTCGGGGCCACCGTGCGCTTCTTGACCGGCAC 22717187 Query 34368 CGGGATGCGGAGCTGGTGAGCGAACTCCTCAGCGGCCTTGTCGACCTCATGGGCCAAGTG 34427 |||||| || | || || ||||||||| || || ||||||||||| ||||| | Sbjct 22717188 CGGGATCCGCAACTCATGGCTGAACTCCTCGGCCGCTCTGTCGACCTCAGCGGCCATCTC 22717247 Query 34428 CCGCAGCACGTCCCGGAACGGACTG--GCCGGG-GCCTCGGAGTACCTCTTGCCGGTCAT 34484 ||||| | | |||| | || ||||| |||| || ||||| ||| |||| Sbjct 22717248 CCGCAAGAAAGCGGTGAACCGCTTGTCTCCGGGTGCCTGCGAATACCTACGGCCTGTCAG 22717307 Query 34485 CGCCAGGAACGAGGCCACACCAAGGTGGCCGACGCCGATCCGGCGGTTCCGGTCCAGCAC 34544 |||| | |||||||| || ||||| || || ||||| || ||||| || ||||| || Sbjct 22717308 GGCCAAATAGGAGGCCACTCCGAGGTGCCCAACACCGATGCGCCGGTTGCGATCCAGAAC 22717367 Query 34545 CTCCCTCGACTTCGGGTCCGCGACCTCCGAGAAGGTCGCCCGGATCAGGAACCGGGTGAT 34604 ||| | |||||| || |||||| | ||||| |||||||||||||||||||| || || Sbjct 22717368 CTCTCGGCTCTTCGGATCAGCGACCGCTGAGAACGTCGCCCGGATCAGGAACCGCGTCAT 22717427 Query 34605 CAGCCTGTGCGCCTTGTACAGCCCGAGGTAGTCCACCTTGTTGGTGTCCTCCCGGACGAA 34664 ||| | ||| || | ||| ||| |||||| ||| || | || |||||| Sbjct 22717428 CAGACGGTGGGCTCGGATCAGGTCGATGTAGTCGGTCTTCCCGG---CGTCGGTGACGAA 22717484 Query 34665 CGCGGCCAGGTTGACGTGGCCCAGGTTGCAGGGCTCCCACGGTTCGAGCGTGATCTCGCC 34724 ||| || ||||||| ||| || |||||||||||||||||||| || ||||||||||| || Sbjct 22717485 CGCCGCGAGGTTGATGTGCCCTAGGTTGCAGGGCTCCCACGGCTCCAGCGTGATCTCCCC 22717544 Query 34725 ACACGGGTTGGTGCAGACGACCTCGTTGGGCTCCCCGACGTTCGACAGCGACGAGTCCCA 34784 |||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct 22717545 GCACGGGTTGGTGCAGACGACCTCGTTGGGCTCACCGACGTTGGACAGGCTGCTGTCCCA 22717604 Query 34785 GAAGCCAGGCTCGCCGTTGGCGACCATGCCCTCGGTGA---TCTT--GCGGAGGATGTAC 34839 | || |||||||||||| || ||||||| || ||| || | ||| | Sbjct 22717605 CATCCCCGGCTCGCCGTTGCGTACGGCTCCCTCGGAGAGAGCCTTCAGCACCCGGTGTGC 22717664 Query 34840 --TC--------CGCGTTGCCACCGCCGA------TCTTCACCGCGTCCCAGAAGTCCTG 34883 || || |||| | ||| ||| || | |||||| | | Sbjct 22717665 CTTCGTGGAGCGCGGGTTGAGCGGGTCGACAGGAGCCTTGGCCAGGCTCCAGAACGCATC 22717724 Query 34884 GTCGACCTCCACCGAGATGTTCGTCGTCCAGTGCGACCCGGTGTCGGCCTTGATCCCGAC 34943 ||| ||||| |||||||||||||| |||||||| || ||| |||| |||||| | Sbjct 22717725 GTCCACCTCGACCGAGATGTTCGTGGTCCAGTGAGATCCGCTGTCCTGCTTGATGTTGGT 22717784 Query 34944 GAAC-----------------CGGTC------GAT------------------CTGCGGG 34962 |||| | ||| ||| |||| | Sbjct 22717785 GAACGTCTCCAGTGAGATCCGCTGTCCTGCTTGATGTTGGTGAACGTCTCGCCCTGCCAG 22717844 Query 34963 TCGTTCCAGTGCATCATCGCCATGCGAGCCGAGCGGCGAACGCCGCCAGCGACCACACAC 35022 || ||||||||||||||||||||||||||| |||||||| || || || ||||||||| Sbjct 22717845 TCCGCCCAGTGCATCATCGCCATGCGAGCCGACCGGCGAACACCTCCGGCCACCACACAC 22717904 Query 35023 TGCGCGATGGCGTGGTCGATCCCCATCGC--CGAGA 35056 ||||||||||||||||||||| ||||||| ||||| Sbjct 22717905 TGCGCGATGGCGTGGTCGATCTCCATCGCATCGAGA 22717940 Score = 392 bits (434), Expect = 1e-104 Identities = 320/388 (82%), Gaps = 3/388 (1%) Strand=Plus/Plus Query 48411 GAGAAGAGCACCGACTTGCGTCCGTTGATGCAGAGCCCGCAGCGAGCGCAGGCTGAACCC 48470 ||||| || || |||||||||||||||||| || ||||| | ||||||||| || ||| Sbjct 22719949 GAGAACAGAACGCTCTTGCGTCCGTTGATGCACAGACCGCACCTAGCGCAGGCCGATCCC 22720008 Query 48471 TTGTCGCTGATCAGCTCGATGGCTTTGTTGTTC---TCCGGGCACCGCGTGGCGTTCGGG 48527 ||| || ||||||| |||| | || ||||||| |||||||| ||| ||| ||||| Sbjct 22720009 TTGGCGTTGATCAGGTCGAAGTCTCGGTTGTTCAGCTCCGGGCAGCGCACGGCCGTCGGG 22720068 Query 48528 AACTGCGCCTTGCCTTCTGCGAAGGTCTGGTCGACGTAGGCGATGTTGATGCCCTTGCCT 48587 ||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| Sbjct 22720069 AACTGTGCCTTGCCTTCGGCGAACGTCGTGTCGACGTAGGCGATGTTGATGCCCTTGCCT 22720128 Query 48588 TCGAGGAACCGTGCGACCTCGATGTTGTCTCGATCCGCGCTGAAGTAGAGCGCGAGGTTC 48647 || |||||||| || || || | |||||| |||||||||||||||| |||| |||||| Sbjct 22720129 TCCAGGAACCGGGCCACGTCTACGTTGTCGGGATCCGCGCTGAAGTACAGCGACAGGTTC 22720188 Query 48648 GACAGCTTCTGCGCGTGCAGGAACACGGCTGCCGTCTGAACCCTTGTGTATGCCCAGAAC 48707 ||||||||||| | ||||||| | || ||||| ||||||||||| ||||| ||||||||| Sbjct 22720189 GACAGCTTCTGTGAGTGCAGGTAGACCGCTGCGGTCTGAACCCTGGTGTAGGCCCAGAAC 22720248 Query 48708 TGCACGTCCGGGTTGTCGGCGATGACTTTCGCCCAGGCGGTGACGTACGTCGGGCTGAAG 48767 |||||||| | ||| |||||| |||||| || | |||||| |||||||||||| Sbjct 22720249 TGCACGTCGCTGAAGTCTCGGATGACACGCGCCCACGCTGCGACGTAGGTCGGGCTGAAG 22720308 Query 48768 AAGTCTCCGTCCCAGTGGATGCGGAACA 48795 ||||| || ||||||||||| ||||||| Sbjct 22720309 AAGTCGCCATCCCAGTGGATACGGAACA 22720336 Score = 309 bits (342), Expect = 1e-79 Identities = 526/747 (70%), Gaps = 24/747 (3%) Strand=Plus/Plus Query 43164 GCACTTGTCCGGCTCTGGGTCCGGGTCAAAGCGCTCGGCGGCGATGTTCTCTTCCAGTTC 43223 ||| |||||||| || || |||||| || | ||| ||||| || || | Sbjct 22718052 GCATTTGTCCGGTTCCGGCAACGGGTCGAACATCGAGGCTGCGATACCTTCCTCGACCCT 22718111 Query 43224 GCGGAACTTCTCCGCGACCCTCTCGCGGGGCCACTCCCCCAAGTCGTAGGGGTACGTCGG 43283 | |||||| ||| | || || || | ||||| | || ||||||||| | ||||| Sbjct 22718112 GTGGAACTCCTCGGTGATGGCTTCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGG 22718171 Query 43284 CTTGC---CCTTCACGCCTTTCTTCCCGGCCATGTAGTAGTCCCCGATCTGCGGGGGCTC 43340 ||| |||| ||| |||||||| ||||| ||||||| ||| ||| ||| | ||| Sbjct 22718172 CTTCGGTGCCTT---GCCCTTCTTCCCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTC 22718228 Query 43341 GATGCCGTAGGTCTCGGCCAGGGCAA-CGCTGTAGACGCCAAGCTGGAAGTCGTCACCGG 43399 || ||||||||| || | || | ||| ||| ||||| ||||||||||||||||| | Sbjct 22718229 GACACCGTAGGTCATCGCGACCGCGAGCGC-GTACACGCCGAGCTGGAAGTCGTCACCCG 22718287 Query 43400 GGGTGTTGCCGGTCTTGTAGTCCCGGACGATCACGTTGCCGTCGCTGTCCCTCAGCACGG 43459 | ||| |||||||||||||||||||| | | ||||| | || | |||| Sbjct 22718288 GTTGGTTCCCGGTCTTGTAGTCCCGGACTCGAAGCTCCCCGTC---GACCACGACGACGG 22718344 Query 43460 CGTCGATGTAGCCCCGGACCAAGACTCCGTCGAGGTCGATGTCGAAGCCCAGCTCGATGC 43519 |||||||||| || || |||| || |||||||| ||||| |||||| ||||||||| Sbjct 22718345 CGTCGATGTATCCGCGAACCAGGATCCCGTCGAGCTCGATCTCGAAGTACAGCTCGATCG 22718404 Query 43520 CTGGGGTGCCGTCAGGGGCGATCCAGATGACCT-CTTCGGGGTGACCTTCGGTCCAGGCG 43578 |||| || ||||| |||| | |||||| ||| ||| || || || ||| ||| Sbjct 22718405 CTGGCGTACCGTCCGGGGTCACCCAGATCTCCTGGCCCGGAGTCTCC--CG--CCACGCG 22718460 Query 43579 AAGAACTTCTCGATCTGCTCCAGCCCGATATGCCAACGGCGTTCGAGATCGCTCGCGCCG 43638 ||||||||||||| ||||||||| |||| | ||||| |||| || | | ||| Sbjct 22718461 AAGAACTTCTCGACCTGCTCCAGGCCGACGGTGTACCGGCGCTCGATGTCTCGCTGACCG 22718520 Query 43639 TCGTAGCGGCCCGACCGGAACCACCAGTCGAAGTTCGGGGTCACGTCGGTGTACTGCGAC 43698 | ||| | || |||| |||||| ||||||||||||||| | |||||| | || | Sbjct 22718521 TTGTACGGACCAGACCACGTCCACCACTCGAAGTTCGGGGTCTCCTCGGTG-AAGGCTCC 22718579 Query 43699 -ACCTCTTTGGCGTACTCCTCCTTGAACATCTCCTGGGCCTCTTCAAGGCTCATCGGATC 43757 || || |||||||| | | |||||| |||| |||||| ||||| ||| ||| Sbjct 22718580 AACGTCGTTGGCGTAGTGCCAACGGAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCAT 22718639 Query 43758 ACCGTCGAGTTCCC--GCCTGCGGTACTCCTCCAGGACGGTGTGGACTGCGCTCCCCTGC 43815 |||| | |||| ||| | | |||| ||| | ||||| || |||||||| Sbjct 22718640 GCCGTAGGACTCCCATACCT--CGACCGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGC 22718697 Query 43816 GGGAGCCAGGCGGCTGGCCTCTGCCATACCTTGTCGACGCGGGCCAGCTTGTA-GCTGTA 43874 || |||||||| ||||||| |||||| |||||||||| || || |||||||| || | Sbjct 22718698 GGCAGCCAGGCCGCTGGCCGCTGCCACACCTTGTCGATCCGAGCGAGCTTGTACGCCAT- 22718756 Query 43875 GGGGCACCGCTCGTACTGCTTGAGCTG 43901 |||||| | |||||| |||| ||| Sbjct 22718757 CGGGCACTTCGTGTACTGGTTGATCTG 22718783 >seq8 Length=24646021 Score = 376 bits (416), Expect = 8e-100 Identities = 635/919 (69%), Gaps = 48/919 (5%) Strand=Plus/Minus Query 11486 GGCCTTCCTGACTCCCGAGCAGAGCCAGGACTACTTCGCGGAGATCGAGAAGACCTCGAT 11545 || || |||| ||||||||| |||| |||||||| ||| ||||||||||||||| Sbjct 19507252 GGGCTACCTGGAGCCCGAGCAGGCGAAGGATTACTTCGCCGAGGCCGAGAAGACCTCGAT 19507193 Query 11546 TGTCCAGCGGATCGCCCGCAAGGTCCCGATGGGTCCGACCGGCATCAGCATCCCCCACTG 11605 ||||||| | |||||| ||||| ||||||||| | || ||| | ||||| ||||| Sbjct 19507192 CGTCCAGCAGTTCGCCCAGAAGGTGCCGATGGGTACCACGGGCCAGAAGATCCCGCACTG 19507133 Query 11606 GACCGGTGCCGTCTCGGCGTCGTGGACCGGCGAGGCCGAGCGCAAGCCGATCACCAAGGG 11665 | ||| | ||| || ||||| ||| |||| || ||||| ||||||||||| Sbjct 19507132 GGTCGGCGACGTGAGTGCCCAGTGGATCGGTGAGGGTGACATGAAGCCCATCACCAAGGG 19507073 Query 11666 TTCGTTCGGCAAGCAGGAACTGGAGCCGGTGAAGATCACCACGATCTTCGCAGAGAGCGC 11725 | |||| | | ||| |||||| | |||||||||| | | || Sbjct 19507072 CAACATGACTTCGCAGACCATCGCGCCCCACAAGATCGCGACGATCTTCGTGGCGTCTGC 19507013 Query 11726 TGAAGTCGTGCGTCTCAACCCGCTCAACTACCTGAACACCATGCGGACCAAGATCGCCGA 11785 || ||| ||| |||||| |||||||||| |||||||| |||||| | || Sbjct 19507012 GGAGACCGTCCGTGCCAACCCCGCCAACTACCTGGGAACCATGCGTACCAAGGTGGCGAC 19506953 Query 11786 GGCCATCGCGCTCAAGTTCGACGCGGCTGCCATCCACGGCATCGACAAGCCGTCTGCGTT 11845 ||| ||||| | |||||||| || || || ||||||| ||||| ||| |||| Sbjct 19506952 CGCCTTCGCGATGGCGTTCGACGGCGCGGCGATGCACGGCACCGACA-GCC-----CGTT 19506899 Query 11846 CAAGGGCTACCTGGCCGAGACGACCAAGGTCGTGTCGCTGGCCGACACCAACCTGACCAC 11905 | | |||| | | |||| ||||||| | | ||| | || ||||||| | |||| Sbjct 19506898 CCCGACCTACATCGGTCAGACCACCAAGGCCATCTCGATTGCTGACACCACCGGTGCCAC 19506839 Query 11906 GGCGTCGGGTCCGCAGGGCAACGCCTACCTGGCGGTCAACAACGCCCTGTCGCTCCTGGT 11965 | | || || || ||| || || | |||| |||| || ||||| Sbjct 19506838 GAC--CGTGTACG-------------ACCAGGTGGCCGTGAACGGCCTGAGCCTGCTGGT 19506794 Query 11966 GAACAGCGGCAAGAAGTGGACCGGCACCCTGCTGGACAACGTCACCGAGCCGATCCTCAA 12025 |||| |||||||||||||||| |||||| |||||| || |||||||||||||||| || Sbjct 19506793 GAACGACGGCAAGAAGTGGACCCACACCCTTCTGGACGACATCACCGAGCCGATCCTGAA 19506734 Query 12026 CACGGCGGTCGACGGCAACGGTCGTCCTCTGTTCGTGGAGTCGACCTACACCGAGCAGGT 12085 | ||| ||| |||||||| || |||||| | |||||||||||| ||| | Sbjct 19506733 CGGCGCGAAGGACCAGAACGGTCGCCCGCTGTTCATCGAGTCGACCTACGGTGAGGCCGC 19506674 Query 12086 CGGCGCGATCCGTGAGGGCCGCATCCTGGGTCGTCCCACCTACGTCGCGGACAACGTGGT 12145 || || ||||| |||||| ||| | | ||||| ||| | || ||| |||| || Sbjct 19506673 GAGCCCGTTCCGTTCGGGCCGGATCGTCGCCCGTCCGACCATCCTCAGCGACCACGTCGT 19506614 Query 12146 CAACGGCACCGTTGGCAACCGCGTGGTCGGCGTCATGGGCGACTTCAGCCAGGTCATCTG 12205 | |||||| || ||||||| ||||||| |||||| |||| ||||||| Sbjct 19506613 GGAGGGCACC-------AC-----GGTCGGCTTCATGGGTGACTTCTCCCAGCTCATCTG 19506566 Query 12206 GGGCCAGATCGGCGGTCTGTCCTTCGACGTGACCGACCAGGCCACCCTGGACTTCGGTGA 12265 ||||||||||||||||||||||||||||||||| || ||||| |||||| || Sbjct 19506565 GGGCCAGATCGGCGGTCTGTCCTTCGACGTGACGGATCAGGCGACCCTGAAC-------- 19506514 Query 12266 GGAACAGGGCGGCGTGTGGGTGCCC-AAGCTGATCTCGCTGTGGCAGCACAACATGGTCG 12324 | |||| ||| | | |||| || | |||||||||||||||||||| | |||| Sbjct 19506513 ----CTGGGCACCGT-CGAGAGCCCGAACTTCGTCTCGCTGTGGCAGCACAACCTCGTCG 19506459 Query 12325 CTGTCCGTTGCGAAGCTGAGTTCGCGTTCATGGTCAACGACAAGGACGCGTTCGTGAAGC 12384 | |||||| ||| ||||||| ||||||| ||||||| || |||||||| | Sbjct 19506458 CAGTCCGTGTCGAGGCTGAGTACGCGTTCCACTGCAACGACGCCGAGGCGTTCGTCGCTC 19506399 Query 12385 TGACCGACCAGGTC-GCGG 12402 ||||| || |||| |||| Sbjct 19506398 TGACCAACGTGGTCAGCGG 19506380 Score = 322 bits (356), Expect = 2e-83 Identities = 530/756 (70%), Gaps = 39/756 (5%) Strand=Plus/Minus Query 10179 CGGACCTTCTACGACGCTCAACGCGCACTCCACCACCCGGAGCTGGACCCCAACGAGAGG 10238 ||||| ||||||||| | || ||| |||||||||||||||||| || |||||||||| Sbjct 19508613 CGGAC-TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGG 19508555 Query 10239 TTGCTGTCCGAGCTTCGGTTCGAGTGGTTCGTGCAGAACATGGAGCCCGCACGCGTCAAG 10298 |||| | ||| || | || ||||||||||| |||||||||||||||||| | Sbjct 19508554 TTGCGGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGG 19508495 Query 10299 TTCTCCCAGGAGGAGGCCGGTGATGCAGGCGTGGCCCAGGTCGCGCTA-CGAGCAGTGCG 10357 || || |||| || | | | || | || || || | | | ||| ||||||| Sbjct 19508494 TTGTCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTGGCGA-CAGTGCG 19508436 Query 10358 CGAAGTCGAGATGGCAGGACGCCGACAGATCATCGGGGCGGTCAAAGACGACCCCGCTCC 10417 |||||| ||||||||||| ||||||||||||||||| || ||||| ||||||| ||||| Sbjct 19508435 CGAAGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCC 19508376 Query 10418 CCGCATCATTCGCGGGTGGGCGCGAGTGGCCACTGGTCGAGAGACCTGTGCCTGGTGCCT 10477 | ||| | || |||||| | || ||||| || || || || || |||||||| || Sbjct 19508375 TCAGATCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCT 19508316 Query 10478 GATGCTCATCTCCCGAGGGCCTGTGTACCTCGGGGCCACCAACGCCGGCCTAGACCTCGA 10537 |||||| || ||||| || || | |||||| ||| | || || || ||||||| Sbjct 19508315 GATGCTGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGA 19508256 Query 10538 TGACGACTCGGCAGCCGAGAT---GATCGCTGCTGGT---------GAGGATGTCAGCGA 10585 ||| | | | ||| | || || ||||| ||| | || |||| Sbjct 19508255 CACCGAGACCGTGGTCGACCTCTGGAACGAGGCTGGCCGCGATCTGGAGAAGTTCCGCGA 19508196 Query 10586 GTA------------CATGGAGCAGTGGCACGCCGGGTGCGACTGCAAAGTGGTGCCGGT 10633 | ||| ||| |||||||||| |||||||||||| |||||||| || Sbjct 19508195 AGAGACCAAGCCCCACATCGAGGAGTGGCACGCAGGGTGCGACTGCCTGGTGGTGCCTGT 19508136 Query 10634 CTTCAAGGTGGACGACTGGCCCGGTTTGGAAGCCCAGAAGCGGGCTCTCCGGTTGTGGAT 10693 |||| | ||||| |||||||||| || || ||| | || ||||| | | | ||||| Sbjct 19508135 CTTCGACGTGGAGAACTGGCCCGGAAAGGCCGCACAGGAACGCGCTCTGCAGCTCTGGAT 19508076 Query 10694 CGACGCAGGGCGCGAAGCGTCCCGGTTGATCGAGTCGGGCAAGGCCCGGACCAACAACAT 10753 |||||| ||| ||||| || | | || | || ||||||||||| |||| ||| Sbjct 19508075 CGACGCTGGGAAAGAAGCCAGCCAGCTCATTGCATCTGGCAAGGCCCGCTCCAAAAACGA 19508016 Query 10754 GAACAAGGAGACGCAGAACGCGCTCCGTCGTCGCCTCGAACGGGGCGAAGTTCGC-ATGT 10812 ||||||||||||| ||||| |||||||| ||| | | || |||| ||||||| |||| Sbjct 19508015 GAACAAGGAGACGATCAACGCTCTCCGTCGCCGCTTGTATCGCGGCG-AGTTCGCAATGT 19507957 Query 10813 CCGAATTCGCTGCTGCTGCAGCGTAGTTCATCCCATCCAAGCCCCCAGGTGGGGCTGTCA 10872 |||| | ||| || || ||||| ||||| || | ||||||||||| ||| Sbjct 19507956 CCGACTACGC-ACT--CGCTGCGTA----ATCCC--CCGA-ACCCCAGGTGGGTTCATCA 19507907 Query 10873 CCTATGCCCAGGAGGCAATCCAACATGTCCGATACC 10908 | ||||||||||||| | |||||||||| ||| Sbjct 19507906 ACCATGCCCAGGAGGCGAAAACACATGTCCGACACC 19507871 Score = 114 bits (126), Expect = 4e-21 Identities = 201/288 (70%), Gaps = 11/288 (4%) Strand=Plus/Minus Query 12783 GTCGAGCGGATGATCAAGCGGCGCATCCCGGACCTGGCCACCAAGGTCACCGACCCGGAC 12842 |||||||| |||||| ||| || ||||| || |||| | ||| ||| | ||||| Sbjct 19506045 GTCGAGCGCATGATCCGGCGTCGGATCCCAGATCTGGACGCCAGGGTGTCTT---CGGAC 19505989 Query 12843 TACCTC---GAAGACCTCAAGCAGGTCGAAGCAGATGCCGTTCTGCGGCTTGTCCGTAAC 12899 | || | || || | | |||| || || || || ||||| || || |||||| Sbjct 19505988 ATCTTCCGGGCCGATCTGATCGACATCGAGGCCGACGCGGTGCTGCGTCTGGTGCGTAAC 19505929 Query 12900 CCCGAGGGCTACCTGTCGGAGACCGACGGCAACTACACGTACATGCTCCGGTCTGACCTC 12959 || ||||||||||| |||||||||||||| ||||| ||| ||||| | |||| || Sbjct 19505928 CCGGAGGGCTACCTCTCGGAGACCGACGGGGCGTACACCTACCAGCTCCAGGCTGATCTG 19505869 Query 12960 GC-CAGCGGGAAGCTGGAGATCTTCCCCGAGGAGTGGGAGATCCTGGG---CTACCGCAG 13015 | ||| || ||||| | ||| | ||| |||||| || | |||| | |||| Sbjct 19505868 TCTCAG-GGCAAGCTCGTCATCCTTGGCGAAGAGTGGACGACCTTGGGAGTCAACCGACT 19505810 Query 13016 ATCTCGCATGACGGTGATCGTCCCGAATCCGGTGATGCCGACATGAGC 13063 || |||||| | ||||||||||| ||||||||||||||||| Sbjct 19505809 CTCGCGCATGTCCACCATCGTCCCGAACATCGTGATGCCGACATGAGC 19505762 Score = 86.0 bits (94), Expect = 2e-12 Identities = 118/166 (71%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 13188 GATGAGCCTTCTCGATGGCGGTCCCGCCTACGAGGACGTGATCGTCTACCCCGAAGAGGT 13247 ||||||||| |||||| ||| || ||| || ||| ||||||||||||||||| | Sbjct 19505574 GATGAGCCTCCTCGATACCGGAGCCCGGTACCAGCCGGTGCTCGTCTACCCCGAAGAGCT 19505515 Query 13248 CGTCACNNNNNNNNNNGGCAACACCCAGACCCGCCCATCCAAGACCGGCATCCCGGCCAA 13307 |||| || |||| |||||| || || |||||| |||| || | Sbjct 19505514 GGTCATCGACGCGGACGGGAACAAGAAGACCCAGCCGTCGAAGACCCCGATCCAAGCGAT 19505455 Query 13308 GGCGCGATTCCAGGT-GCAAGGCCAGTCCGGTACGTCGGCACGACG 13352 || || |||||||| || | |||||||||||||||||||||||| Sbjct 19505454 CGCACGCTTCCAGGTCGCCAA-CCAGTCCGGTACGTCGGCACGACG 19505410 >seq9 Length=46179939 Score = 309 bits (342), Expect = 1e-79 Identities = 526/747 (70%), Gaps = 24/747 (3%) Strand=Plus/Minus Query 43164 GCACTTGTCCGGCTCTGGGTCCGGGTCAAAGCGCTCGGCGGCGATGTTCTCTTCCAGTTC 43223 ||| |||||||| || || |||||| || | ||| ||||| || || | Sbjct 16532292 GCATTTGTCCGGTTCCGGCAACGGGTCGAACATCGAGGCTGCGATACCTTCCTCGACCCT 16532233 Query 43224 GCGGAACTTCTCCGCGACCCTCTCGCGGGGCCACTCCCCCAAGTCGTAGGGGTACGTCGG 43283 | |||||| ||| | || || || | ||||| | || ||||||||| | ||||| Sbjct 16532232 GTGGAACTCCTCGGTGATGGCTTCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGG 16532173 Query 43284 CTTGC---CCTTCACGCCTTTCTTCCCGGCCATGTAGTAGTCCCCGATCTGCGGGGGCTC 43340 ||| |||| ||| |||||||| ||||| ||||||| ||| ||| ||| | ||| Sbjct 16532172 CTTCGGTGCCTT---GCCCTTCTTCCCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTC 16532116 Query 43341 GATGCCGTAGGTCTCGGCCAGGGCAA-CGCTGTAGACGCCAAGCTGGAAGTCGTCACCGG 43399 || ||||||||| || | || | ||| ||| ||||| ||||||||||||||||| | Sbjct 16532115 GACACCGTAGGTCATCGCGACCGCGAGCGC-GTACACGCCGAGCTGGAAGTCGTCACCCG 16532057 Query 43400 GGGTGTTGCCGGTCTTGTAGTCCCGGACGATCACGTTGCCGTCGCTGTCCCTCAGCACGG 43459 | ||| |||||||||||||||||||| | | ||||| | || | |||| Sbjct 16532056 GTTGGTTCCCGGTCTTGTAGTCCCGGACTCGAAGCTCCCCGTC---GACCACGACGACGG 16532000 Query 43460 CGTCGATGTAGCCCCGGACCAAGACTCCGTCGAGGTCGATGTCGAAGCCCAGCTCGATGC 43519 |||||||||| || || |||| || |||||||| ||||| |||||| ||||||||| Sbjct 16531999 CGTCGATGTATCCGCGAACCAGGATCCCGTCGAGCTCGATCTCGAAGTACAGCTCGATCG 16531940 Query 43520 CTGGGGTGCCGTCAGGGGCGATCCAGATGACCT-CTTCGGGGTGACCTTCGGTCCAGGCG 43578 |||| || ||||| |||| | |||||| ||| ||| || || || ||| ||| Sbjct 16531939 CTGGCGTACCGTCCGGGGTCACCCAGATCTCCTGGCCCGGAGTCTCC--CG--CCACGCG 16531884 Query 43579 AAGAACTTCTCGATCTGCTCCAGCCCGATATGCCAACGGCGTTCGAGATCGCTCGCGCCG 43638 ||||||||||||| ||||||||| |||| | ||||| |||| || | | ||| Sbjct 16531883 AAGAACTTCTCGACCTGCTCCAGGCCGACGGTGTACCGGCGCTCGATGTCTCGCTGACCG 16531824 Query 43639 TCGTAGCGGCCCGACCGGAACCACCAGTCGAAGTTCGGGGTCACGTCGGTGTACTGCGAC 43698 | ||| | || |||| |||||| ||||||||||||||| | |||||| | || | Sbjct 16531823 TTGTACGGACCAGACCACGTCCACCACTCGAAGTTCGGGGTCTCCTCGGTG-AAGGCTCC 16531765 Query 43699 -ACCTCTTTGGCGTACTCCTCCTTGAACATCTCCTGGGCCTCTTCAAGGCTCATCGGATC 43757 || || |||||||| | | |||||| |||| |||||| ||||| ||| ||| Sbjct 16531764 AACGTCGTTGGCGTAGTGCCAACGGAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCAT 16531705 Query 43758 ACCGTCGAGTTCCC--GCCTGCGGTACTCCTCCAGGACGGTGTGGACTGCGCTCCCCTGC 43815 |||| | |||| ||| | | |||| ||| | ||||| || |||||||| Sbjct 16531704 GCCGTAGGACTCCCATACCT--CGACCGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGC 16531647 Query 43816 GGGAGCCAGGCGGCTGGCCTCTGCCATACCTTGTCGACGCGGGCCAGCTTGTA-GCTGTA 43874 || |||||||| ||||||| |||||| |||||||||| || || |||||||| || | Sbjct 16531646 GGCAGCCAGGCCGCTGGCCGCTGCCACACCTTGTCGATCCGAGCGAGCTTGTACGCCAT- 16531588 Query 43875 GGGGCACCGCTCGTACTGCTTGAGCTG 43901 |||||| | |||||| |||| ||| Sbjct 16531587 CGGGCACTTCGTGTACTGGTTGATCTG 16531561 Score = 275 bits (304), Expect = 2e-69 Identities = 224/271 (83%), Gaps = 3/271 (1%) Strand=Plus/Minus Query 48411 GAGAAGAGCACCGACTTGCGTCCGTTGATGCAGAGCCCGCAGCGAGCGCAGGCTGAACCC 48470 ||||| || || |||||||||||||||||| || ||||| | ||||||||| || ||| Sbjct 16530395 GAGAACAGAACGCTCTTGCGTCCGTTGATGCACAGACCGCACCTAGCGCAGGCCGATCCC 16530336 Query 48471 TTGTCGCTGATCAGCTCGATGGCTTTGTTGTTC---TCCGGGCACCGCGTGGCGTTCGGG 48527 ||| || ||||||| |||| | || ||||||| |||||||| ||| ||| ||||| Sbjct 16530335 TTGGCGTTGATCAGGTCGAAGTCTCGGTTGTTCAGCTCCGGGCAGCGCACGGCCGTCGGG 16530276 Query 48528 AACTGCGCCTTGCCTTCTGCGAAGGTCTGGTCGACGTAGGCGATGTTGATGCCCTTGCCT 48587 ||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| Sbjct 16530275 AACTGTGCCTTGCCTTCGGCGAACGTCGTGTCGACGTAGGCGATGTTGATGCCCTTGCCT 16530216 Query 48588 TCGAGGAACCGTGCGACCTCGATGTTGTCTCGATCCGCGCTGAAGTAGAGCGCGAGGTTC 48647 || |||||||| || || || | |||||| |||||||||||||||| |||| |||||| Sbjct 16530215 TCCAGGAACCGGGCCACGTCTACGTTGTCGGGATCCGCGCTGAAGTACAGCGACAGGTTC 16530156 Query 48648 GACAGCTTCTGCGCGTGCAGGAACACGGCTG 48678 ||||||||||| | ||||||| | || |||| Sbjct 16530155 GACAGCTTCTGTGAGTGCAGGTAGACCGCTG 16530125 >seq1 Length=46747018 Score = 196 bits (216), Expect = 2e-45 Identities = 175/212 (83%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 3730 CCATTGATCTGTAGCTCAATCGGCAGAGCACCCGGCTGTTAACCGGGACGTTGGAGGTTC 3789 ||| ||| ||||||||||| ||||||||| ||||||||||||||| |||| |||||| Sbjct 34903450 CCACTGACGTGTAGCTCAAT-GGCAGAGCATCCGGCTGTTAACCGGACGGTTGAAGGTTC 34903392 Query 3790 GAGTCCTCCCAGATCAGCCATGCGAGCGGTTCCTGCCGTATCG-GAGGAGCCCTCGCACA 3848 ||||||| || ||||||| ||| |||||||| || | || | ||||||| ||||| Sbjct 34903391 GAGTCCTTCCTCGTCAGCCAAGCGGGCGGTTCC--CCAGAGCGTGGGGAGCCCCCGCACC 34903334 Query 3849 TAGG-CACGTAGCTCAATTGGTCAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTCG 3907 || ||||||||||||||||| ||||||| |||||||||||||||||| | |||||||| Sbjct 34903333 AAGTACACGTAGCTCAATTGGT-AGAGCAGTGGTCTCCAAAGCCGCCGGTTCCAGGTTCG 34903275 Query 3908 AGTCCTGCCGTGTCTGCAACCACCCAGTTCCC 3939 | ||||| ||||| ||| ||||||| ||||| Sbjct 34903274 ACTCCTGGCGTGTATGCCACCACCC--TTCCC 34903245 Score = 147 bits (162), Expect = 7e-31 Identities = 223/310 (72%), Gaps = 7/310 (2%) Strand=Plus/Minus Query 605 GCGGGCTGGATCTGTGAGATCGGTTGGTCCGGTTGCCTGCTTGAGGCGACCGAGGTCGAC 664 || || ||| | |||||| ||| | |||| ||| | | | || ||||| || ||| Sbjct 34905229 GCCGGGTGGCTGTGTGAGGTCGACGGCCCCGGCTGCGTCCGGGCTGCCACCGACGTAGAC 34905170 Query 665 CACATCCGTCGTGGTGACGACCATTCACGCGCCAACCTACGAGCCGCGTGCTC-GTCGTG 723 |||| | || ||||||| || || ||||||| | ||| ||| ||| || Sbjct 34905169 CACAAGAAGCCAGGGAACGACCACTCGCGGTCCAACCTGCAAGCGATCTGCCGTGTC-TG 34905111 Query 724 CCACGGCAAGAAGTCATCCGCTGAGGGCAACGCCCGGAAGCGGCAGTTACGAGCCAGGAG 783 |||||||||||||||| ||||||||||| ||||| |||| | | ||| |||| Sbjct 34905110 CCACGGCAAGAAGTCAGCCGCTGAGGGCGTAGCCCGACGGCGGGAACTCAAGGCCCGGAG 34905051 Query 784 GAAGCGACC-GACCGAACGCCACCCTGGCCG-CATATAGCGGGCCAGGAGCCCGCTGACC 841 ||||||||| || | ||||||||||||| || | | ||||||||||| ||| ||| || Sbjct 34905050 GAAGCGACCAGAAC-AACGCCACCCTGGGCGTCGTTAAGCGGGCCAGGTGCCTGCT--CC 34904994 Query 842 ACCCAGGAGGTGACAGTGGGCGAACGAGGCCCTGTGCGTAAACGGTCGGATCAACGCGTC 901 |||||||||||||| |||||| ||| ||||| | | ||||| || ||||||| Sbjct 34904993 ACCCAGGAGGTGACTGTGGGCACACGCGGCCCCATCGGAAAACGCGACGAAGAACGCGTT 34904934 Query 902 CGACGCAACA 911 || ||||||| Sbjct 34904933 CGTCGCAACA 34904924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162333347429760