Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq82 266 3e-66 >seq82 Length=657493 Score = 266 bits (294), Expect = 3e-66 Identities = 874/1329 (66%), Gaps = 57/1329 (4%) Strand=Plus/Plus Query 136622 TCTTGGTGGCTCAATACCATTTGTGCTATTAGAAACTTGAGAAGATGATTCACAAGGCAT 136681 ||||||||| ||||| ||||| || |||||| | |||||| |||| ||| ||||||| Sbjct 459932 TCTTGGTGGTTCAATTCCATTAGTTGCATTAGATATTTGAGAGGATGTTTCTGAAGGCAT 459991 Query 136682 TAATGCAGATAAAGTACTGTTTCTGATACCGTATTGCTTAAGGTCTTTACGTAA-AGATT 136740 | ||||||||| || |||||| | || | || |||| | ||| || | ||| Sbjct 459992 AAGTGCAGATAATGTTGAGTTTCTTAATCCATGTTTTTTAATTTTAGAACGCAATATATT 460051 Query 136741 CCCAATCACAAACATATTCTGGTTTAAC---TACTTTATCAAGGTTTTTATTATACCAAT 136797 || |||| || || |||| | | || |||||||| || ||| || || || Sbjct 460052 CC-AATCTAAATGCAAT---GGTTCATCGCATATTTTATCAATGTCTTTTTTGTATGTAT 460107 Query 136798 CAATGGGTAATAAGCCTTGAGAATATTTAGTTTCATGA--TAAAGCTCACAAGGTCCTTT 136855 | || |||||| ||| | |||| ||||| | || | ||||| ||| | |||||| Sbjct 460108 CTATAGGTAATTTACCTAAATAATAATTAGTGTGATTAAATAAAGA--ACATGCTCCTTT 460165 Query 136856 TTCTTTTGCTAAATCAACAGAGGCCT-TAATTAATCCATACTGTAAACGTTCAAATAACT 136914 |||||||||||||||| |||||| | |||| ||| ||| || | |||||| | | Sbjct 460166 TTCTTTTGCTAAATCACAAGAGGCTTGTAATAAATA-ATATTGCATGGCTTCAAA-AGTT 460223 Query 136915 C-ATGAGTAAACTGTTGAGCATTATCATAATTTAAAAAC-TGCGA-------AGCTAAAG 136965 | ||| || || | || ||| || ||| | || | | | || ||||| Sbjct 460224 CTATGTGTTAAGTTTTTTGCACTACCATC--TGAATAGCGTACGTTATTTTTAGCTAGGT 460281 Query 136966 AAGCAGCATAATTAGTTACACCAACACCTAATGCACGGCGTTTTTTAGC--AATCAAT-G 137022 || ||| |||| ||||||||| ||| || | ||| | |||| | || | | Sbjct 460282 AATATGCAAAATTGATTACACCAATACCCAAAGAACGTCTAGAAATAGCTGATTCTTTAG 460341 Query 137023 CTTTTTCTACAGGATAATCTTGATAATCTAATAAAGCATCCAATGCTCTAACAGCCAC-A 137081 || | || ||||||| |||||| ||||||| |||| | ||| | ||| | | | Sbjct 460342 CTGCTAATATTGGATAATTTTGATATTCTAATATTTCATCAAGTGCACGAACTGATAATA 460401 Query 137082 CGTGCAATTTTATTAATTTGTTCTTGGTCTTGATAATCAAATGAATCAAGTACAAATGCT 137141 | |||| | | || | | || | || |||| | | | || || || || Sbjct 460402 CAGATAATTCTTTAAAATC--TGTTAGA-TTATTAAT--AGTTCCTAAATTAAAA--GCA 460454 Query 137142 GATAGAGTGCAAAGTGCTATTTCCCC------ATCATCTTTACTAATATCAC---TCGTG 137192 |||| || |||||||| ||||| || |||||| || || | | | ||| Sbjct 460455 GATAATGTACAAAGTGCAATTTCTCCTTTTTTATCATCAATATTATTTAAAGATTTAGTG 460514 Query 137193 GGTAATGTAATCTCTGCGCATAAATTGCTTAATCTAATAGGAGACGTTTCTCTAATAAAT 137252 ||||| ||||| ||| ||||||||| | ||| || ||||| || | ||||| Sbjct 460515 GGTAAAGTAATTTCTAAGCATAAATTAGATTGTCTTATTGGAGATAATTTAGGATTAAAT 460574 Query 137253 GAACTTTGTCTATTAACATTATCAACAAAGAATGGATAAATTCTTGCTGTATTAGCACGC 137312 | ||| ||| |||| || ||| ||| | |||||| | | ||||| | | Sbjct 460575 GCACTATGTGAATTACAATGATCTACATTTTGTATATAAATACGTCCTGTAGATGTTCTT 460634 Query 137313 TCTGTTAATAAAATAGAAAATACTTCAGATGCCTTGATTCGTTTTTTACGAATAGAAGTA 137372 ||| | | | ||||||| || |||| || || | |||||| || ||| || Sbjct 460635 TCTTGCATGATTAACGAAAATAAATCTAATGCTTTTATACTTTTTTTCCGTATATTTTTA 460694 Query 137373 TCTTTTTC-TGCGGCTTCGTATAAATCACGGAATTTCTGTTCGTTACTAAAATAAGCATC 137431 | |||||| | | | ||| || ||||| | || ||| |||| || | Sbjct 460695 TTTTTTTCATATTGAATA-TATTTTTCTTCAAATTTTTCTTGATTAGAAAAAAAATATTT 460753 Query 137432 ATACATACCAGGGATTTCATGTGGACTAAACAATGTAATATAATCATCATTA-ATTAGTC 137490 ||| | ||| | ||| || ||||| |||||||| | | || | | | || || Sbjct 460754 ATATAAGTTAGGAACATCAGACGGGCTAAATAATGTAATTTTTTT-TCCTGATAATAATC 460812 Query 137491 GTTCAATCATAAGGTCATTAATTTGAACACCATAATCTAAATGACGAATACGGTTTTCTT 137550 || | ||| | | ||||||||| || ||||||| | ||||| | | ||||||| Sbjct 460813 TTTGATACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTT 460872 Query 137551 CAATACCTTTATTATTTTTAAGAACTAACAATTTTTCTAATTCAAGGTGCCACATTGGGT 137610 |||| || |||||||||| | |||||| || |||| | ||||| ||||| ||||| | Sbjct 460873 CAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGAT 460932 Query 137611 AATATAAAGTAGCAGAACCACCTCGAATCCCACCTTGGGAACATGATTTTACAGA---TG 137667 || ||| ||| || | ||||||| || || ||||| ||||| |||||||||| | Sbjct 460933 AAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTT 460992 Query 137668 CCAAATGGGTTTTCCAAAATGGAATGACACCGGTATGGACAACTTCGCCAAATCCTATTT 137727 ||||| ||| |||| ||||| ||| ||||| | |||||||| || || Sbjct 460993 GAAAATG---TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAG 461049 Query 137728 TAGACCCTTCAGCCCTATACATACCGGCATTAATACCAATACCAGCTCTTTTAGAAATGT 137787 | ||| | || | | | || |||||||||||||| || |||| || ||||| | Sbjct 461050 GACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACAT 461109 Query 137788 ATTTTACAATAGCTGCATTTGTTTCATTAATAGAATCTAAAGAATCACCGCTATCAATAA 137847 |||||||||||| | | || | ||||||||||||| | |||| | | ||||| | Sbjct 461110 ATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTA 461169 Query 137848 CTACGCAAGAACTAAATTGACGTGTTGGGGTTCTTACACCAGACAAAATTGGTGTTGGTA 137907 || || || |||||||| || || || ||||| || ||||||| ||||||||| |||| Sbjct 461170 AAACACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTA 461229 Query 137908 AAGACAATT 137916 |||| |||| Sbjct 461230 AAGA-AATT 461237 Score = 132 bits (146), Expect = 5e-26 Identities = 232/335 (69%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 135760 ATAATATGGGTATACGAACGAGAATGAATTGTTTCACTAAATGACCAGGTCTGAATCCAT 135819 |||||||| ||||| ||||| || ||||| ||||| ||| ||||| || | |||||| Sbjct 459124 ATAATATGAGTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAG 459183 Query 135820 GTTTCTAAAGATACATCAGAACAAATAGATAATAAAGCCTCTGAAGGACCTCTGCCTTGG 135879 |||||||| | |||| ||| | || ||||| ||||| ||| ||||| Sbjct 459184 GTTTCTAATTCCGGAATAGAAATAATTGGTAGAAAAGCAATGTTAGGACTTCTTCCTTGA 459243 Query 135880 ATTGAATCTAATAATGTTTGATATTTTAAATTATTAGTAAAGATTCTTTTTTCGTGTTCA 135939 || || ||||||||||||||||||||||||||| || ||| || |||||| |||||| Sbjct 459244 ATAGAGTCTAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCA 459303 Query 135940 GGTAATTTGTCATATTGTGCCTTATCTGTCATTAAGTTTACTTCTTCAGGACGCCaaaaa 135999 ||||| || | | | | | ||||| | | || ||||||||| | ||||||| Sbjct 459304 GGTAAATTTTGAAAATCTATTCTATCTCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAA 459363 Query 136000 aaGCTTAAAGCTTTTTCAGTCAAGTCTTCAAAGACCCGAT-GTTTTACTGTTTCGTAACG 136058 || | ||||||| | || | |||||| | || |||| ||| || || || Sbjct 459364 AAAGAGAGTTGTTTTTCAATTAATTTTTCAAAAATATTATATTTTTGCTG-ATCATATCG 459422 Query 136059 TGCAATACCTGTGGATTCACCAAAAAACATTGGTT 136093 |||||| | || ||||||||||| |||| Sbjct 459423 GGCAATATTGACAGGTTGTCCAAAAAACATAGGTT 459457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518227886327040