Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028764.1 Length=49316 Score E Sequences producing significant alignments: (Bits) Value seq341 235 2e-57 >seq341 Length=107858 Score = 235 bits (260), Expect = 2e-57 Identities = 399/572 (70%), Gaps = 12/572 (2%) Strand=Plus/Plus Query 964 AGACCTTTTCCGAAAGTAGTTGCTACAGCTCCAACACGACAACAATTATATGACGTACTA 1023 ||||| | || ||| || | ||| ||||||||| || |||||||| || || || Sbjct 21862 AGACCATACCCAAAAATAATATGTACCGCTCCAACAAAGCAGCAATTATACGATGTGCTT 21921 Query 1024 TGGGCTGAAATAGCTAAATGGCTAAGTAATAG----CAAGGTTGAGAAGCTACTTGA-GT 1078 ||||| || || || |||||||| |||||| |||| ||| | | |||| || Sbjct 21922 TGGGCAGAGATTGCAAAATGGCT---TAATAGTTCTCAAG--TGAAAGACCTGTTGAAGT 21976 Query 1079 GGACTAAAACAAAAGTGTATATGAAAGGCTTTGAAGAAAGATGGTGGGCTACAGCTAGAA 1138 |||| ||||| || | ||||||||||| || || || | |||| ||||| || | || Sbjct 21977 GGACGAAAACCAAGATTTATATGAAAGGTTTCGAGGATCGTTGGTTTGCTACGGCAAAAA 22036 Query 1139 CAGCAGTAAAGCCCGAGAATATGCAAGGTTTTCATGAAGATTATATGTTATTTGTTGTTG 1198 ||||| || || |||||||||||||| ||||||||||| ||| ||||| ||| | Sbjct 22037 CAGCAACCCGTCCTGAAAATATGCAAGGTTTCCATGAAGATTACATGCTATTTATTGCCG 22096 Query 1199 ATGAAGCTTCGGGAGTTGCTGACCCCATTATGGAAGCTATATTGGGAACATTATCAGGTG 1258 |||||||||| || | |||||| |||||||| || || | || || ||||| ||| Sbjct 22097 ATGAAGCTTCTGGTATAGCTGACGATATTATGGAGGCCATTCTTGGTACGTTATCTGGTT 22156 Query 1259 CAGAAAATAAGCTTCTTTTATGCGGAAACCCAACTAGAACGAGTGGAACGTTTTACGATA 1318 |||||||||| | || | || || ||||| |||| ||| ||||| |||| ||| Sbjct 22157 CAGAAAATAAATTATTTATGTGTGGTAACCCGACTAAAACTAGTGGGGTCTTTTTTGATT 22216 Query 1319 GCCATAATAGAGACAGAGATTTATATAAAACATTTAAAGTATCTTCTTTAGATAGCCCTA 1378 ||||||| |||||||| || |||||| | |||||||||| | |||| || Sbjct 22217 CTCATAATAAAGACAGAGCATTGTATAAATCTCATAAAGTATCTAGTGAAGATTCACCAC 22276 Query 1379 GAACATCAAAAGATAATATTGAAATGCTAAAAAGAAAGTACCATGAAGGTTCTGACCCTT 1438 | || ||| | || ||||||||||| || | |||||| |||||||| || | Sbjct 22277 GGACCAGTAAAAAGAACATTGAAATGCTTAAGAAAAAGTATGGAGAAGGTTCAGATGTAT 22336 Query 1439 GGCGTGTTAGAGTTCTTGGAGAATTTCCAAAAGGTGAAAGTGATTCTTTAATATCTTTAG 1498 || ||| | || || ||||| || |||||| ||| | || || || ||| Sbjct 22337 ATCGGGTTCGTGTAGAGGGTGAATTCCCTCGTGGTGAAGCAGATGCATTTATTTCACTAG 22396 Query 1499 AAGCTGTTGAAACAAGCAC-AATAAGAGAAGT 1529 || ||| ||| | ||||| || |||||||| Sbjct 22397 AAACTGCAGAAGC-AGCACGGATGAGAGAAGT 22427 Score = 235 bits (260), Expect = 2e-57 Identities = 399/572 (70%), Gaps = 12/572 (2%) Strand=Plus/Plus Query 964 AGACCTTTTCCGAAAGTAGTTGCTACAGCTCCAACACGACAACAATTATATGACGTACTA 1023 ||||| | || ||| || | ||| ||||||||| || |||||||| || || || Sbjct 72423 AGACCATACCCAAAAATAATATGTACCGCTCCAACAAAGCAGCAATTATACGATGTGCTT 72482 Query 1024 TGGGCTGAAATAGCTAAATGGCTAAGTAATAG----CAAGGTTGAGAAGCTACTTGA-GT 1078 ||||| || || || |||||||| |||||| |||| ||| | | |||| || Sbjct 72483 TGGGCAGAGATTGCAAAATGGCT---TAATAGTTCTCAAG--TGAAAGACCTGTTGAAGT 72537 Query 1079 GGACTAAAACAAAAGTGTATATGAAAGGCTTTGAAGAAAGATGGTGGGCTACAGCTAGAA 1138 |||| ||||| || | ||||||||||| || || || | |||| ||||| || | || Sbjct 72538 GGACGAAAACCAAGATTTATATGAAAGGTTTCGAGGATCGTTGGTTTGCTACGGCAAAAA 72597 Query 1139 CAGCAGTAAAGCCCGAGAATATGCAAGGTTTTCATGAAGATTATATGTTATTTGTTGTTG 1198 ||||| || || |||||||||||||| ||||||||||| ||| ||||| ||| | Sbjct 72598 CAGCAACCCGTCCTGAAAATATGCAAGGTTTCCATGAAGATTACATGCTATTTATTGCCG 72657 Query 1199 ATGAAGCTTCGGGAGTTGCTGACCCCATTATGGAAGCTATATTGGGAACATTATCAGGTG 1258 |||||||||| || | |||||| |||||||| || || | || || ||||| ||| Sbjct 72658 ATGAAGCTTCTGGTATAGCTGACGATATTATGGAGGCCATTCTTGGTACGTTATCTGGTT 72717 Query 1259 CAGAAAATAAGCTTCTTTTATGCGGAAACCCAACTAGAACGAGTGGAACGTTTTACGATA 1318 |||||||||| | || | || || ||||| |||| ||| ||||| |||| ||| Sbjct 72718 CAGAAAATAAATTATTTATGTGTGGTAACCCGACTAAAACTAGTGGGGTCTTTTTTGATT 72777 Query 1319 GCCATAATAGAGACAGAGATTTATATAAAACATTTAAAGTATCTTCTTTAGATAGCCCTA 1378 ||||||| |||||||| || |||||| | |||||||||| | |||| || Sbjct 72778 CTCATAATAAAGACAGAGCATTGTATAAATCTCATAAAGTATCTAGTGAAGATTCACCAC 72837 Query 1379 GAACATCAAAAGATAATATTGAAATGCTAAAAAGAAAGTACCATGAAGGTTCTGACCCTT 1438 | || ||| | || ||||||||||| || | |||||| |||||||| || | Sbjct 72838 GGACCAGTAAAAAGAACATTGAAATGCTTAAGAAAAAGTATGGAGAAGGTTCAGATGTAT 72897 Query 1439 GGCGTGTTAGAGTTCTTGGAGAATTTCCAAAAGGTGAAAGTGATTCTTTAATATCTTTAG 1498 || ||| | || || ||||| || |||||| ||| | || || || ||| Sbjct 72898 ATCGGGTTCGTGTAGAGGGTGAATTCCCTCGTGGTGAAGCAGATGCATTTATTTCACTAG 72957 Query 1499 AAGCTGTTGAAACAAGCAC-AATAAGAGAAGT 1529 || ||| ||| | ||||| || |||||||| Sbjct 72958 AAACTGCAGAAGC-AGCACGGATGAGAGAAGT 72988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157687023351936