Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq82 143 3e-29 >seq82 Length=657493 Score = 143 bits (158), Expect = 3e-29 Identities = 243/351 (69%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 20021 TAATCACTTAATGCAACCTATGTTTTTCGGTGATGAACCTGG---TATTGCGCGTTACGA 20077 |||||| ||| | ||||||||||||| || | ||||| |||||| || || || Sbjct 459471 TAATCAACTAAAGGAACCTATGTTTTTTGGACA---ACCTGTCAATATTGCCCGATATGA 459415 Query 20078 TACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCG 20137 | || ||| || | || || ||||| ||||||||||| || | ||| || ||| | Sbjct 459414 TCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAG 459355 Query 20138 TCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGA 20197 |||||||| | || | |||| |||| || |||| | | |||||||| |||||||| Sbjct 459354 ACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAAAATTTACCTGAACATGA 459295 Query 20198 AAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACG 20257 ||||||||| ||| | ||||| || ||||| | ||| | || | |||| ||| | Sbjct 459294 AAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAG 459235 Query 20258 TGCTCCTAACACTGCTTTTATGTCCATCGTATCTGATGTAACACTTGACACATGGATTCC 20317 |||||||| ||||||| | | || | ||| | | | || || |||||| Sbjct 459234 AAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGA 459175 Query 20318 TACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTAT 20368 || ||| | || ||||| || || ||| ||||||||||| || ||||| Sbjct 459174 AACATGGTCTTTTTCGGAAACTATTCACTCACGTTCTTATACTCATATTAT 459124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582725976940800