Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq82 217 2e-51 >seq82 Length=657493 Score = 217 bits (240), Expect = 2e-51 Identities = 317/444 (71%), Gaps = 12/444 (3%) Strand=Plus/Minus Query 22764 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 22823 ||||||||| | || | || ||| | ||||| || || || || |||||| |||| Sbjct 461266 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 461207 Query 22824 TGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAGGCAGGTGAT--TCAT 22881 | | ||||| |||||||| ||||| ||||| ||| | ||||| | ||||| | || Sbjct 461206 GTTAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGA---ATGTGATGATAAT 461150 Query 22882 -TAAAGTCTATCAATAAGGCTTCCGCT---TCAATTGTTGAATATATCTCTAAACGCGCT 22937 || | ||||| ||| ||| | || || ||||| ||||| | ||| |||| || Sbjct 461149 CTAGATTCTAT---TAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCA 461093 Query 22938 GGAATTGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAA 22997 |||||||||||||| | ||| | |||||||| | |||| | ||| | | || ||| Sbjct 461092 GGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAA 461033 Query 22998 GTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGT 23057 | | ||||||||| ||||||||||| ||||||||||| | |||||| ||||| ||| Sbjct 461032 GCATTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGT 460973 Query 23058 TCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAA 23117 || || || ||| || | ||||| || || ||| | |||||| || |||||||| ||| Sbjct 460972 TCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAA 460913 Query 23118 GTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCAT 23177 |||||| | | | ||||| |||||||| | || | |||||||| | | ||||| Sbjct 460912 ATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCAC 460853 Query 23178 ATGGATTATGGTGTTCAACTGAAT 23201 | ||||||| || ||| | ||| Sbjct 460852 GTTGATTATGCAGTACAAATTAAT 460829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534659603696640