Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028789.1 Length=18609 Score E Sequences producing significant alignments: (Bits) Value seq137 98.7 1e-16 >seq137 Length=409738 Score = 98.7 bits (108), Expect = 1e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 14763 GCGTTGTTTGTGTGGTTACTATTAACTACACAAAAGAAGAACGATGCTAGG-GAGTTACG 14821 || || || || ||| | || || ||||| ||||| ||||| || || | | || || Sbjct 39995 GCATTATTCGTATGGATGCTTTTTACTACGCAAAAAAAGAATGA-GCAACGTGAAGAACA 39937 Query 14822 TTATCAAGAAGCAATTAATCAGAATCAAATCGTTATACAAGAACAAGCGAAATCTTTTGG 14881 |||||| || ||| | |||| ||| || || |||| ||||||||| |||| || Sbjct 39936 ATATCAATTAGTAATCCAAAAGAACCAACAAGTCATTGAAGAGCAAGCGAAAGCTTTCGG 39877 Query 14882 TTCTATATCAAAGGATGTAACTGAAATCAAACAAAAACTATTCGAGGGAGACGTTGCATA 14941 ||||| || || |||||||| ||||| ||||||||||| || || || |||| | ||| Sbjct 39876 GTCTATTTCTAAAGATGTAACAGAAATTAAACAAAAACTTTTTGAAGGGGACGATAAATA 39817 Query 14942 ATG 14944 ||| Sbjct 39816 ATG 39814 Score = 98.7 bits (108), Expect = 1e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 14763 GCGTTGTTTGTGTGGTTACTATTAACTACACAAAAGAAGAACGATGCTAGG-GAGTTACG 14821 || || || || ||| | || || ||||| ||||| ||||| || || | | || || Sbjct 82716 GCATTATTCGTATGGATGCTTTTTACTACGCAAAAAAAGAATGA-GCAACGTGAAGAACA 82658 Query 14822 TTATCAAGAAGCAATTAATCAGAATCAAATCGTTATACAAGAACAAGCGAAATCTTTTGG 14881 |||||| || ||| | |||| ||| || || |||| ||||||||| |||| || Sbjct 82657 ATATCAATTAGTAATCCAAAAGAACCAACAAGTCATTGAAGAGCAAGCGAAAGCTTTCGG 82598 Query 14882 TTCTATATCAAAGGATGTAACTGAAATCAAACAAAAACTATTCGAGGGAGACGTTGCATA 14941 ||||| || || |||||||| ||||| ||||||||||| || || || |||| | ||| Sbjct 82597 GTCTATTTCTAAAGATGTAACAGAAATTAAACAAAAACTTTTTGAAGGGGACGATAAATA 82538 Query 14942 ATG 14944 ||| Sbjct 82537 ATG 82535 Score = 98.7 bits (108), Expect = 1e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 14763 GCGTTGTTTGTGTGGTTACTATTAACTACACAAAAGAAGAACGATGCTAGG-GAGTTACG 14821 || || || || ||| | || || ||||| ||||| ||||| || || | | || || Sbjct 125437 GCATTATTCGTATGGATGCTTTTTACTACGCAAAAAAAGAATGA-GCAACGTGAAGAACA 125379 Query 14822 TTATCAAGAAGCAATTAATCAGAATCAAATCGTTATACAAGAACAAGCGAAATCTTTTGG 14881 |||||| || ||| | |||| ||| || || |||| ||||||||| |||| || Sbjct 125378 ATATCAATTAGTAATCCAAAAGAACCAACAAGTCATTGAAGAGCAAGCGAAAGCTTTCGG 125319 Query 14882 TTCTATATCAAAGGATGTAACTGAAATCAAACAAAAACTATTCGAGGGAGACGTTGCATA 14941 ||||| || || |||||||| ||||| ||||||||||| || || || |||| | ||| Sbjct 125318 GTCTATTTCTAAAGATGTAACAGAAATTAAACAAAAACTTTTTGAAGGGGACGATAAATA 125259 Query 14942 ATG 14944 ||| Sbjct 125258 ATG 125256 Score = 98.7 bits (108), Expect = 1e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 14763 GCGTTGTTTGTGTGGTTACTATTAACTACACAAAAGAAGAACGATGCTAGG-GAGTTACG 14821 || || || || ||| | || || ||||| ||||| ||||| || || | | || || Sbjct 168526 GCATTATTCGTATGGATGCTTTTTACTACGCAAAAAAAGAATGA-GCAACGTGAAGAACA 168468 Query 14822 TTATCAAGAAGCAATTAATCAGAATCAAATCGTTATACAAGAACAAGCGAAATCTTTTGG 14881 |||||| || ||| | |||| ||| || || |||| ||||||||| |||| || Sbjct 168467 ATATCAATTAGTAATCCAAAAGAACCAACAAGTCATTGAAGAGCAAGCGAAAGCTTTCGG 168408 Query 14882 TTCTATATCAAAGGATGTAACTGAAATCAAACAAAAACTATTCGAGGGAGACGTTGCATA 14941 ||||| || || |||||||| ||||| ||||||||||| || || || |||| | ||| Sbjct 168407 GTCTATTTCTAAAGATGTAACAGAAATTAAACAAAAACTTTTTGAAGGGGACGATAAATA 168348 Query 14942 ATG 14944 ||| Sbjct 168347 ATG 168345 Score = 98.7 bits (108), Expect = 1e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 14763 GCGTTGTTTGTGTGGTTACTATTAACTACACAAAAGAAGAACGATGCTAGG-GAGTTACG 14821 || || || || ||| | || || ||||| ||||| ||||| || || | | || || Sbjct 339560 GCATTATTCGTATGGATGCTTTTTACTACGCAAAAAAAGAATGA-GCAACGTGAAGAACA 339502 Query 14822 TTATCAAGAAGCAATTAATCAGAATCAAATCGTTATACAAGAACAAGCGAAATCTTTTGG 14881 |||||| || ||| | |||| ||| || || |||| ||||||||| |||| || Sbjct 339501 ATATCAATTAGTAATCCAAAAGAACCAACAAGTCATTGAAGAGCAAGCGAAAGCTTTCGG 339442 Query 14882 TTCTATATCAAAGGATGTAACTGAAATCAAACAAAAACTATTCGAGGGAGACGTTGCATA 14941 ||||| || || |||||||| ||||| ||||||||||| || || || |||| | ||| Sbjct 339441 GTCTATTTCTAAAGATGTAACAGAAATTAAACAAAAACTTTTTGAAGGGGACGATAAATA 339382 Query 14942 ATG 14944 ||| Sbjct 339381 ATG 339379 Score = 98.7 bits (108), Expect = 1e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 14763 GCGTTGTTTGTGTGGTTACTATTAACTACACAAAAGAAGAACGATGCTAGG-GAGTTACG 14821 || || || || ||| | || || ||||| ||||| ||||| || || | | || || Sbjct 382876 GCATTATTCGTATGGATGCTTTTTACTACGCAAAAAAAGAATGA-GCAACGTGAAGAACA 382818 Query 14822 TTATCAAGAAGCAATTAATCAGAATCAAATCGTTATACAAGAACAAGCGAAATCTTTTGG 14881 |||||| || ||| | |||| ||| || || |||| ||||||||| |||| || Sbjct 382817 ATATCAATTAGTAATCCAAAAGAACCAACAAGTCATTGAAGAGCAAGCGAAAGCTTTCGG 382758 Query 14882 TTCTATATCAAAGGATGTAACTGAAATCAAACAAAAACTATTCGAGGGAGACGTTGCATA 14941 ||||| || || |||||||| ||||| ||||||||||| || || || |||| | ||| Sbjct 382757 GTCTATTTCTAAAGATGTAACAGAAATTAAACAAAAACTTTTTGAAGGGGACGATAAATA 382698 Query 14942 ATG 14944 ||| Sbjct 382697 ATG 382695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59429454462336