Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15]
1,376 sequences; 930,507,853 total letters
Query= NC_028804.1
Length=52643
Score E
Sequences producing significant alignments: (Bits) Value
seq18 170 6e-38
seq9 170 6e-38
>seq18
Length=36757632
Score = 170 bits (188), Expect = 6e-38
Identities = 406/603 (67%), Gaps = 32/603 (5%)
Strand=Plus/Plus
Query 42105 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTT---------GCCGGTCTTC 42155
|| |||||||| | |||||||||||| || | |||||||| ||| |||||
Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193
Query 42156 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACTCCGTACAGCTCTTTCAGG--G 42207
||| ||||||| ||||| | | || | ||||| ||||| | || | | |
Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTA--GGTCATCGCGACCG 22718251
Query 42208 CCAGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTAGCTCCC-GACTTCCAGTCA 42266
| ||||||||||| ||||||| ||||| || || || || | |||| | ||| ||||
Sbjct 22718252 CGAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCC 22718310
Query 42267 ACGACTTGCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCGCGGATCTCTATC 42326
|||| | | ||| ||||||| ||||| || ||||||||||| ||||| | | |||
Sbjct 22718311 CGGACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATC 22718370
Query 42327 CCATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCAT 42386
|| |||||||||| ||||| ||||| ||| | || || |||||||| || |||
Sbjct 22718371 CCGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAG 22718430
Query 42387 ACCTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCG 42446
| ||| ||| || | | || ||| | | | ||| || ||||||| ||| |||
Sbjct 22718431 ATCTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCG 22718487
Query 42447 ATACCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAAGCGAACCACCAG 42506
| | || || |||||||| | ||| |||||| || || ||||||
Sbjct 22718488 ACGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCAC 22718547
Query 42507 CCGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TT 42562
||| ||| |||||||||||||| || || | ||| |||||| | |||
Sbjct 22718548 TCGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACG 22718603
Query 42563 GAAGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGATAGCATGTA 42622
||| || || | | ||| || |||||||||| |||| | || | ||| | |
Sbjct 22718604 GAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGAC 22718663
Query 42623 TTTCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCA 42682
|||||| || ||||||| | | || |||||| |||||||||||||||| || | |||
Sbjct 22718664 CGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCA 22718723
Query 42683 CAC 42685
|||
Sbjct 22718724 CAC 22718726
>seq9
Length=46179939
Score = 170 bits (188), Expect = 6e-38
Identities = 406/603 (67%), Gaps = 32/603 (5%)
Strand=Plus/Minus
Query 42105 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTT---------GCCGGTCTTC 42155
|| |||||||| | |||||||||||| || | |||||||| ||| |||||
Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151
Query 42156 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACTCCGTACAGCTCTTTCAGG--G 42207
||| ||||||| ||||| | | || | ||||| ||||| | || | | |
Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTA--GGTCATCGCGACCG 16532093
Query 42208 CCAGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTAGCTCCCGA-CTTCCAGTCA 42266
| ||||||||||| ||||||| ||||| || || || || | ||||| ||| ||||
Sbjct 16532092 CGAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCC 16532034
Query 42267 ACGACTTGCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCGCGGATCTCTATC 42326
|||| | | ||| ||||||| ||||| || ||||||||||| ||||| | | |||
Sbjct 16532033 CGGACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATC 16531974
Query 42327 CCATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCAT 42386
|| |||||||||| ||||| ||||| ||| | || || |||||||| || |||
Sbjct 16531973 CCGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAG 16531914
Query 42387 ACCTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCG 42446
| ||| ||| || | | || ||| | | | ||| || ||||||| ||| |||
Sbjct 16531913 ATCTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCG 16531857
Query 42447 ATACCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAAGCGAACCACCAG 42506
| | || || |||||||| | ||| |||||| || || ||||||
Sbjct 16531856 ACGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCAC 16531797
Query 42507 CCGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TT 42562
||| ||| |||||||||||||| || || | ||| |||||| | |||
Sbjct 16531796 TCGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACG 16531741
Query 42563 GAAGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGATAGCATGTA 42622
||| || || | | ||| || |||||||||| |||| | || | ||| | |
Sbjct 16531740 GAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGAC 16531681
Query 42623 TTTCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCA 42682
|||||| || ||||||| | | || |||||| |||||||||||||||| || | |||
Sbjct 16531680 CGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCA 16531621
Query 42683 CAC 42685
|||
Sbjct 16531620 CAC 16531618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 168333249389760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |